Processed file: bio5414642909810222288.tmp
Number of sequences: 12
Alignment assumed to be: Protein
New number of positions: 235 (selected positions are underlined in blue)
10 20 30 40 50 60 70 80 90 100
=========+=========+=========+=========+=========+=========+=========+=========+=========+=========+
CACHIT IAVYWGQNGNEGSLQDACNTNNYQFVNIAFLSTFGNGQNPQINLAGHCDPSTNGCTKFSPEIQACQAKGIKVLLSLGGGAGSYSLNSAEEATTLANYLWN
PSTCHIT IAVYWGQNGGEGSLADTCNTGNYEFVNIAFLSTFGSGQTPQLNLAGHCDPSSNGCTGFSSEIQTCQNRGIKVLLSLGGSAGTYSLNSADDATQLANYLWD
NTACIDCL3 IVIYWGQNGNEGSLADTCATNNYAIVNIAFLVVFGNGQNPVLNLAGHCDPNAGACTGLSNDIRACQNQGIKVMLSLGGGAGSYFLSSADDARNVANYLWN
S66038 IVIYWGQNGDEGSLADTCNSGNYGTVILAFVATFGNGQTPALNLAGHCDPATN-CNSLSSDIKTCQQAGIKVLLSIGGGAGGYSLSSTDDANTFADYLWN
ATHCHIA IAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTHFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWN
VURNACH3B IAIYWGQNGNEGTLSEACDTGRYTHVNIAFLNKFGNGQTPEMNLAGHCNPATNSCTKFSAQIKYCQSKNIKVLLSIGGGIGTYTLASVEDAGTVSTFLWN
CUSSEQ_1 IAIYWGQNGNEGSLASTCATGNYEFVNIAFLSSFGSGQTPVLNLAGHCNPDNNGCAFVSDEINSCQSQNVKVLLSIGGGVGRYSLSSANNAKQVAGFLWN
CUSSEQ_2 IAIYWGQNGNEGSLASTCATGNYEFVNIAFLSSFGSGQAPVLNLAGHCNPDNNGCAFLSDEINSCKSQNVKVLLSIGGGAGSYSLSSADDAKQVANFIWN
CUSSEQ_3 IGIYWGQNGNEGSLASTCATGNYEFVNIAFLSSFGGGQTPVLNLAGHCNPDNNGCTILSNEINSCQSQNVKVLLSIGGGTGSYSLYSADDAKEVANFIWN
VIRECT ISVYWGQNGNEGSLADACNTGNYKYVNIAFLFTFGGGQTPQLNLAGHCNPSINNCNVFSDQIKECQSKDIKVLLSLGGASGSYSLTSADDATQVANYIWN
VURNACH3A ISVYWGQNGNEGSLADACNTGNYKYVNIAFLSAFGGGQTPQLNLAGHCNPSINNCNVFSDQIKGCQSRGIKVLPSLGGASGSYSLSSADDATQVANYIWN
NTBASICL3 IVVYWGQDVGEGKLIDTCNSGLYNIVNIAFLSSFGNFQTPKLNLAGHCEPSSGGCQQLTKSIRHCQSIGIKIMLSIGGGTPTYTLSSVDDARQVADYLWN
##################################################### ##############################################
110 120 130 140 150 160 170 180 190 200
=========+=========+=========+=========+=========+=========+=========+=========+=========+=========+
CACHIT NFLGGTSTSRPLGDAVLDGIDFDIESGG-QHYDELAKALNGFSQ-Q---KVYLSAAPQCPYPDAHLDSAIQTGLFDYVWVQFYNNPQCQYSNGNINNLVN
PSTCHIT NFLGGQSGSRPLGDAVLDGVDFDIESGGSNHYDDLARALNSLSS-Q--KKVYLSAAPQCIIPDQHLDAAIQTGLFDYVWVQFYNNPSCQYSNGGTTNLIN
NTACIDCL3 NYLGGQSNTRPLGDAVLDGIDFDIEGGTTQHWDELAKTLSQFSQ-Q--RKVYLTAAPQCPFPDTWLNGALSTGLFDYVWVQFYNNPPCQYSGGSADNLKN
S66038 TYLGGQSSTRPLGDAVLDGIDFDIESGDGRFWDDLARALAGHNNGQ--KTVYLSAAPQCPLPDASLSTAIATGLFDYVWVQFYNNPPCQYDT-SADNLLS
ATHCHIA NFLGGKSSSRPLGDAVLDGIDFNIELGSPQHWDDLARTLSKFSH-R-GRKIYLTGAPQCPFPDRLMGSALNTKRFDYVWIQFYNNPPCSYSSGNTQNLFD
VURNACH3B TFLGGHSSTRPLGDAELDGIDFDIEQGSTQNYDHLARFLKAYSK-KGKKRVYLGAAPQCPIPDRFLGTALDTGLFDFVWVQFYNNPPCQYADGNVTNLLN
CUSSEQ_1 NYLGGQSDSRPLGDAVLDGVDFVIGFGSGQFWDVLARELKSFG------QVILSAAPQCPFPDAQLDAAIRTGLFDSVWVQFYNNPPCMYAD-NADNLLS
CUSSEQ_2 SYLGGQSDSRPLGAAVLDGVDFDIESGSGQFWDVLAQELKNFG------QVILSAAPQCPIPDAHLDAAIKTGLFDSVWVQFYNNPPCMFAD-NADNLLS
CUSSEQ_3 SYLGGQSDSRPLGDAVLDGVDFDIEFGSDQFWDVLAQELKSFG------QVILSAAPQCPIPDAHLDAAIRTGLFDSVWVQFYNNPSCMYAD-NTDDILS
VIRECT NFLGGQSSSRPLGDAILDGVDFDIESGTGEHWDDLARALKGFNS-----QLLLTAAPQCPIPDAHLDTAIKTGLFDIVWVQFYNNPPCQYSSGNTNDLIS
VURNACH3A NFLGGQSSSRPLGDAVLDGVDFDIEAGSGNHWDDLARSLKGNNS-----QLLLAAAPQCPIPDAHLDSAIKTGLFDYVWVQFYNNPPCQYSSGNTNSLIS
NTBASICL3 NFLGGQSSFRPLGDAVLDGIDFDIELGQP-HYIALARRLSEHGQ-Q-GKKLYLTAAPQCPFPDKLLNGALQTGLFDYVWVQFYNNPECEFMS-NSENFKR
########################### ############ ######################################## #######
210 220 230 240 250
=========+=========+=========+=========+=========+=======
CACHIT AWNQWTS-SQAKQVFLGVPASDAAAPSGGLIPADVLTSQVLPAIKTSPKYGGVMIWD
PSTCHIT SWNQWIT-VPASLVFMGLPASDAAAPSGGFVSTDVLTSQVLPVIKQSSKYGGVMLWD
NTACIDCL3 YWNQWNA-IQAGKIFLGLPAAQGAAGSG-FIPSDVLVSQVLPLINGSPKYGGVMLWS
S66038 SWNQWTT-VQANQIFLGLPASTDAAGSG-FIPADALTSQVLPTIKGSAKYGGVMLWS
ATHCHIA SWNKWTTSIAAQKFFLGLPAAPEAADSG-YIPPDVLTSQILPTLKKSRKYGGVMLWS
VURNACH3B SWKRWTSTVPAGKIFLGLPAPPAAAGSG-FVPADVLTSKILPVIKKSRKYGGVMLWS
CUSSEQ_1 SWNQWAA-YPISKLYMGLPAAPEAAPSGGFIPADVLISQVLPTIKTSSNYGGVMLWS
CUSSEQ_2 SWNQWTA-FPTSKLYMGLPAAREAAPSGGFIPADVLISQVLPTIKASSNYGGVMLWS
CUSSEQ_3 SWNQWAA-YPILKLYMGLPAAPEAAPSGGFIPVDELISEVLPTIKAYSNYGGVMLWS
VIRECT SWNQWTS-SQAKQLFLGVPASTAAAGSG-FIPADVLTSQVLPTIKGSSKYGGVMLWD
VURNACH3A SWNQWTS-SQAKQLFLGVPASTAAAGSG-FIPANDLISQVLPAIKGSSKYGGVMLWD
NTBASICL3 RWNQWTS-IPAKKLYIGLPAAKTAAGN-GYIPKQVLMSQVLPFLKGSSKYGGVMLWN
###### ################# ###########################
Parameters used Minimum Number Of Sequences For A Conserved Position: 7 Minimum Number Of Sequences For A Flanking Position: 10 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: None Use Similarity Matrices: Yes
Flank positions of the 7 selected block(s) Flanks: [1 53] [55 127] [131 142] [151 190] [194 206] [211 227] [230 256] New number of positions in bio5414642909810222288.tmp.fsa: 235 (91% of the original 257 positions)