Processed file: bio5414642909810222288.tmp
Number of sequences: 12
Alignment assumed to be: Protein
New number of positions: 235 (selected positions are underlined in blue)
10 20 30 40 50 60 70 80 90 100 =========+=========+=========+=========+=========+=========+=========+=========+=========+=========+ CACHIT IAVYWGQNGNEGSLQDACNTNNYQFVNIAFLSTFGNGQNPQINLAGHCDPSTNGCTKFSPEIQACQAKGIKVLLSLGGGAGSYSLNSAEEATTLANYLWN PSTCHIT IAVYWGQNGGEGSLADTCNTGNYEFVNIAFLSTFGSGQTPQLNLAGHCDPSSNGCTGFSSEIQTCQNRGIKVLLSLGGSAGTYSLNSADDATQLANYLWD NTACIDCL3 IVIYWGQNGNEGSLADTCATNNYAIVNIAFLVVFGNGQNPVLNLAGHCDPNAGACTGLSNDIRACQNQGIKVMLSLGGGAGSYFLSSADDARNVANYLWN S66038 IVIYWGQNGDEGSLADTCNSGNYGTVILAFVATFGNGQTPALNLAGHCDPATN-CNSLSSDIKTCQQAGIKVLLSIGGGAGGYSLSSTDDANTFADYLWN ATHCHIA IAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTHFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWN VURNACH3B IAIYWGQNGNEGTLSEACDTGRYTHVNIAFLNKFGNGQTPEMNLAGHCNPATNSCTKFSAQIKYCQSKNIKVLLSIGGGIGTYTLASVEDAGTVSTFLWN CUSSEQ_1 IAIYWGQNGNEGSLASTCATGNYEFVNIAFLSSFGSGQTPVLNLAGHCNPDNNGCAFVSDEINSCQSQNVKVLLSIGGGVGRYSLSSANNAKQVAGFLWN CUSSEQ_2 IAIYWGQNGNEGSLASTCATGNYEFVNIAFLSSFGSGQAPVLNLAGHCNPDNNGCAFLSDEINSCKSQNVKVLLSIGGGAGSYSLSSADDAKQVANFIWN CUSSEQ_3 IGIYWGQNGNEGSLASTCATGNYEFVNIAFLSSFGGGQTPVLNLAGHCNPDNNGCTILSNEINSCQSQNVKVLLSIGGGTGSYSLYSADDAKEVANFIWN VIRECT ISVYWGQNGNEGSLADACNTGNYKYVNIAFLFTFGGGQTPQLNLAGHCNPSINNCNVFSDQIKECQSKDIKVLLSLGGASGSYSLTSADDATQVANYIWN VURNACH3A ISVYWGQNGNEGSLADACNTGNYKYVNIAFLSAFGGGQTPQLNLAGHCNPSINNCNVFSDQIKGCQSRGIKVLPSLGGASGSYSLSSADDATQVANYIWN NTBASICL3 IVVYWGQDVGEGKLIDTCNSGLYNIVNIAFLSSFGNFQTPKLNLAGHCEPSSGGCQQLTKSIRHCQSIGIKIMLSIGGGTPTYTLSSVDDARQVADYLWN ##################################################### ############################################## 110 120 130 140 150 160 170 180 190 200 =========+=========+=========+=========+=========+=========+=========+=========+=========+=========+ CACHIT NFLGGTSTSRPLGDAVLDGIDFDIESGG-QHYDELAKALNGFSQ-Q---KVYLSAAPQCPYPDAHLDSAIQTGLFDYVWVQFYNNPQCQYSNGNINNLVN PSTCHIT NFLGGQSGSRPLGDAVLDGVDFDIESGGSNHYDDLARALNSLSS-Q--KKVYLSAAPQCIIPDQHLDAAIQTGLFDYVWVQFYNNPSCQYSNGGTTNLIN NTACIDCL3 NYLGGQSNTRPLGDAVLDGIDFDIEGGTTQHWDELAKTLSQFSQ-Q--RKVYLTAAPQCPFPDTWLNGALSTGLFDYVWVQFYNNPPCQYSGGSADNLKN S66038 TYLGGQSSTRPLGDAVLDGIDFDIESGDGRFWDDLARALAGHNNGQ--KTVYLSAAPQCPLPDASLSTAIATGLFDYVWVQFYNNPPCQYDT-SADNLLS ATHCHIA NFLGGKSSSRPLGDAVLDGIDFNIELGSPQHWDDLARTLSKFSH-R-GRKIYLTGAPQCPFPDRLMGSALNTKRFDYVWIQFYNNPPCSYSSGNTQNLFD VURNACH3B TFLGGHSSTRPLGDAELDGIDFDIEQGSTQNYDHLARFLKAYSK-KGKKRVYLGAAPQCPIPDRFLGTALDTGLFDFVWVQFYNNPPCQYADGNVTNLLN CUSSEQ_1 NYLGGQSDSRPLGDAVLDGVDFVIGFGSGQFWDVLARELKSFG------QVILSAAPQCPFPDAQLDAAIRTGLFDSVWVQFYNNPPCMYAD-NADNLLS CUSSEQ_2 SYLGGQSDSRPLGAAVLDGVDFDIESGSGQFWDVLAQELKNFG------QVILSAAPQCPIPDAHLDAAIKTGLFDSVWVQFYNNPPCMFAD-NADNLLS CUSSEQ_3 SYLGGQSDSRPLGDAVLDGVDFDIEFGSDQFWDVLAQELKSFG------QVILSAAPQCPIPDAHLDAAIRTGLFDSVWVQFYNNPSCMYAD-NTDDILS VIRECT NFLGGQSSSRPLGDAILDGVDFDIESGTGEHWDDLARALKGFNS-----QLLLTAAPQCPIPDAHLDTAIKTGLFDIVWVQFYNNPPCQYSSGNTNDLIS VURNACH3A NFLGGQSSSRPLGDAVLDGVDFDIEAGSGNHWDDLARSLKGNNS-----QLLLAAAPQCPIPDAHLDSAIKTGLFDYVWVQFYNNPPCQYSSGNTNSLIS NTBASICL3 NFLGGQSSFRPLGDAVLDGIDFDIELGQP-HYIALARRLSEHGQ-Q-GKKLYLTAAPQCPFPDKLLNGALQTGLFDYVWVQFYNNPECEFMS-NSENFKR ########################### ############ ######################################## ####### 210 220 230 240 250 =========+=========+=========+=========+=========+======= CACHIT AWNQWTS-SQAKQVFLGVPASDAAAPSGGLIPADVLTSQVLPAIKTSPKYGGVMIWD PSTCHIT SWNQWIT-VPASLVFMGLPASDAAAPSGGFVSTDVLTSQVLPVIKQSSKYGGVMLWD NTACIDCL3 YWNQWNA-IQAGKIFLGLPAAQGAAGSG-FIPSDVLVSQVLPLINGSPKYGGVMLWS S66038 SWNQWTT-VQANQIFLGLPASTDAAGSG-FIPADALTSQVLPTIKGSAKYGGVMLWS ATHCHIA SWNKWTTSIAAQKFFLGLPAAPEAADSG-YIPPDVLTSQILPTLKKSRKYGGVMLWS VURNACH3B SWKRWTSTVPAGKIFLGLPAPPAAAGSG-FVPADVLTSKILPVIKKSRKYGGVMLWS CUSSEQ_1 SWNQWAA-YPISKLYMGLPAAPEAAPSGGFIPADVLISQVLPTIKTSSNYGGVMLWS CUSSEQ_2 SWNQWTA-FPTSKLYMGLPAAREAAPSGGFIPADVLISQVLPTIKASSNYGGVMLWS CUSSEQ_3 SWNQWAA-YPILKLYMGLPAAPEAAPSGGFIPVDELISEVLPTIKAYSNYGGVMLWS VIRECT SWNQWTS-SQAKQLFLGVPASTAAAGSG-FIPADVLTSQVLPTIKGSSKYGGVMLWD VURNACH3A SWNQWTS-SQAKQLFLGVPASTAAAGSG-FIPANDLISQVLPAIKGSSKYGGVMLWD NTBASICL3 RWNQWTS-IPAKKLYIGLPAAKTAAGN-GYIPKQVLMSQVLPFLKGSSKYGGVMLWN ###### ################# ###########################
Parameters used Minimum Number Of Sequences For A Conserved Position: 7 Minimum Number Of Sequences For A Flanking Position: 10 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: None Use Similarity Matrices: Yes
Flank positions of the 7 selected block(s) Flanks: [1 53] [55 127] [131 142] [151 190] [194 206] [211 227] [230 256] New number of positions in bio5414642909810222288.tmp.fsa: 235 (91% of the original 257 positions)