LIST OF PUBLICATIONS:

• Muntahi Mourin, Arittra Bhattacharjee, Alvin Wai, Georg Hausner, Joe O'Neil and Pavel Dibrov. (2021) Pharmacophore-based screening and modification of amiloride analogs for targeting the NhaP-type cation-proton antiporter in Vibrio cholerae Can J Microbiol. 67, 835-49.

• George L. Orriss, Vu To, A. Moya-Torres, Genvieve Seabrook, Joe D. O'Neil and Jörg Stetefeld. (2020) Solution Structure of the cytoplasmic domain of NhaP2 a K+ /H+ antiporter from Vibrio cholera. Biochim. Biophys Acta Biomembr 1862, 183225.

• Mary Hernando, George Orriss, Jacqueline Perodeau, Shixing. Lei, Fraser Ferens, Trushar Patel, Jörg Stetefeld, Andrew Nieuwkoop, and Joe O'Neil.(2020) Solution structure and oligomeric state of the E. coli glycerol facilitator. Biochim. Biophys. Acta Biomembr. 1862, 183191. Selected by the editor for a special edition of the journal.

• Muntahi Mourin, Alvin Wai, Joe O'Neil, George Hausner and Pavel Dibrov. (2019) Physiological, Structural and Functional Analysis of the Paralogous Cation-Proton Antiporters of NhaP Type from Vibrio cholerae. Int J Mol Sci. 20, 2572. Review.

• Muntahi Mourin, Alvin Wai, Joe D. O'Neil, Carla Schubiger, Claudia. C. Häse, Georg Hausner and Pavel Dibrov (2018) A Pathway Leading to Cation Binding Pocket Determines the Selectivity of NhaP2 Antiporter in Vibrio cholerae. Biochem Cell Biol. 97, 307-14.

• Natalie Krahn, Marcus Meier, Vu To, Evan P. Booy, Kevin McEleney, Joe D. O'Neil, Sean A. McKenna, Trushar R. Patel, and Jörg Stetefeld (2017) Nanoscale Assembly of High-Mobility Group AT-Hook 2 Protein with DNA Replication Fork. Biophys J. 113(12), 2609-2620.

• Vu To, Edis Dzananovic, Sean A. McKenna, Joe O'Neil (2016) The Dynamic Landscape of Full-Length HIV-1 Transactivator of Transcription. Biochemistry 55, 1314-25. (accepted February 5, 2016.)

• Noreen Klein, Jennifer Neumann, Joe D. O'Neil and Dirk Schneider (2014) Folding and stability of the aquaglyceroporin GlpF: Implications for human aqua(glycero)porin diseases. Biochim. Biophys. Acta - Biomembranes 1848, 622-33.

• Simon Baturin, Jamie J. Galka, Hadeesha Piyadasa, S. Gajjeraman and Joe D. O'Neil (2014) The effects of a protein osmolyte on the stability of the integral membrane protein glycerol facilitator. Biochem. Cell. Biol. 92, 564-75.

• Ronald Domalaon, Xuan Yang, Joe O'Neil, George G. Zhanel, Neeloffer Mookherjee and Frank Schweizer (2014) Structure-activity relationships in ultrashort cationic lipopeptides: the effects of amino acid ring constraint on antibacterial activity. Amino Acids 46, 2517-30.

• Bing Xu, Raja Chakraborty, Markus Eilers, Shyamala Dakshinamurti, Joe D. O'Neil, Steven O. Smith, Rajinder P. Bhullar, Prashen Chelikani (2013) High-Level Expression, Purification and Characterization of a Constitutively Active Thromboxane A2 Receptor Polymorphic Variant. PLoS One 8, e76481. doi:10.1371/journal.pone.0076481

• Yan Pan, Hadeesha Piyadasa, Joe D. O'Neil, Lars Konermann (2012)Conformational Dynamics of a Membrane Transport Protein Probed by H/D Exchange and Covalent Labeling: The Glycerol Facilitator. J. Mol. Biol. 416, 400-413.

• Shaheen Shojania and J. D. O'Neil (2011) Order from Disorder: Structure, Function and Dynamics of the HIV-1 Transactivator of Transcription. in Flexible viruses: structural disorder in viral proteins pp. 223-256. V. Uversky and S. Longhi eds., John Wiley and Sons, New Jersey.

• Peter McQueen, Lynda J. Donald, Dung H. Nguyen, Heather Griffiths, Shaheen Shojania, Kenneth G. Standing and Joe D. O'Neil (2011) Tat peptide-calmodulin binding studies and bioinformatics of HIV-1 protein-calmodulin interactions. Proteins 79, 2233-46.

• Shaheen Shojania and Joe D. O'Neil (2010) Intrinsic Disorder and Function of the HIV-1 Tat Protein. Protein Pept. Lett 17, 999-1011.

• Shojania, S., Henry, G.D., Chen, V.C., Vo, T.N., Perreault, H., and O'Neil, J.D. (2010) High yield expression and purification of HIV-1 Tat1-72 for structural studies. J. Virol. Methods 164, 35-42.

• Evgeniy S. Salnikov, Marta De Zotti, Fernando Formaggio, Xing Li, Claudio Toniolo, Joe D. J. O'Neil, Jan Raap, Sergei A. Dzuba, and Burkhard Bechinger. (2009) Alamethicin Topology in Phospholipid Membranes by Oriented Solid-state NMR and EPR Spectroscopies: a Comparison. The Journal of Physical Chemistry B 113, (10), 3034-42.

• Lynda J. Donald, Vladimir M. Collado, Jamie J. Galka, Joe D. O'Neil, Harry W. Duckworth, Peter C. Loewen and Kenneth G. Standing (2009) Urea as a protein destabilizing agent in electrospray ionisation. Rapid Communications in Mass Spectrometry 23, 788-92.

• Evgeniy S. Salnikov, Herdis Friedrich, Xing Li, Philippe Bertani, Siegmund Reissmann, Christian Hertweck, Joe D. J. O'Neil, Jan Raap and Burkhard Bechinger (2009) Structure and alignment of the membrane-associated peptaibols ampullosporin A and alamethicin by oriented ¹⁵N and ³¹P solid-state NMR spectroscopy. Biophysical J. 96, 86-100.

• Denice C. Bay, Joe D. O'Neil and Deborah A. Court (2008) The influence of st erols on the conformation of recombinant mitochondrial porin in detergent. Biochem. Cell Biol. 86, 539-45.

• J. J. Galka, S. Baturin, D. M. Manley, A. Kehler, and J. D. O'Neil (2008) Stability of the Glycerol Facilitator in Detergent Solutions Biochemistry 47, 3513-24.

• Hao Qi, Joe O'Neil and Torsten Hegmann (2008) Chirality transfer in nematic liquid crystals doped with (S)-naproxen functionalized gold nanoclusters: an induced circular dichroism study J. Materials Chemistry 18, 374-80.

• Denice C. Bay, Joe D. O'Neil, and Deborah A. Court (2008) Two-Step Folding of Recombinant Mitochondrial Porin in Detergent. Biophysical Journal 94, 457-68.

• Neil W. Owens, Craig Braun, Joe D. O'Neil, Kirk Marat, and Frank Schweizer (2007) Effects of Glycosylation of (2 S,4 R)-4-Hydroxyproline on the Conformati on, Kinetics, and Thermodynamics of Prolyl Amide Isomerization J. American Chemical Society 129, 11,670-71.

• Shaheen Shojania and Joe D. O'Neil (2006) HIV-1 Tat is a Natively Unfolded Protein: The Solution Conformation and Dynamics of Reduced HIV-1 Tat1-7 2 by NMR Spectroscopy. J. Biol. Chem. 281, 8347-56.

• Darren M. Manley, and Joe D. O'Neil (2003) Preparation of Glycerol Facilitator for Protein Structure and Folding Studies in Solution In Membrane Protein Protocols (Ed. B . Selinsky) The Humana Press, Inc., pp 89-101.

• Bechinger, B., Skladnev, D. A., Ogrel, A., Li, X., Rogozhkina, E. V., Ovchin nikova, T. V., O'Neil, J. D., and Raap, J. (2001) ¹⁵N and ³¹ P solid-state NMR investigations on the orientation of Zervamicin II and Alame thicin in phosphatidylcholine membranes Biochemistry 40, 9428-37.

• D. M. Manley, M. E. McComb, H. Perreault, L. J. Donald, H. W. Duckworth , and J. D. O'Neil. (2000) Secondary structure and oligomerization of the E. c oli Glycerol Facilitator Biochemistry 39, 12,303-11.

• G. S. Runke, E. Maier, J. D. O'Neil, R. Benz, and D. A. Court (2000) Functional characterization of the conserved GLK motif in mitochondrial porin from Neurospora crassa. J. Bioenerget. Biomemb. 32, 437-4 4.

• A. A. Yee, B. Szymczyna, and J. D. O'Neil. (1999) Backbone dynamics of detergent-solubilized alamethicin from amide hydrogen exchange measurements. Biochemistry 38, 6489-6498.

• J. Switala, J. D. O'Neil, and P. C. Loewen. (1999) Catalase HPII from Escher ichia coli exhibits enhanced resistance to denaturation. Biochemistry 38, 3895-3901.

• Lateef O. Adewoye, Lorelee Tschetter, Joe O'Neil, and Elizabeth A. Worobec (1998) Channel Specificity and Secondary Structure of the Glucose-Inducible Porins of Pseudomonas spp. Journal of Bioenergetics and Biomembranes 30 , 257-267.

• M.E. McComb, R.D. Oleschuk, D.M. Manley, L. Donald, A. Chow, J. D. O'Neil, W . Ens, K.G. Standing, and H. Perreault (1997) Use of a Non-Porous Polyurethane M embrane as a Sample Support for Matrix-assisted Laser Desorption/Ionization Time -of-Flight Mass Spectrometry of Peptides and Proteins. Rapid Communications in Mass Spectrometry 11, 1716-17 22.

• Adelinda. A. Yee, Kirk Marat, and Joe D. J. O'Neil (1997) The interactions with solvent, heat stability, and C-13 labelling of alamethicin ;an ion-channel-forming peptide. European J. Biochem. 243, 283-291.

• Leo Spyracopoulos, Adelinda A. Yee, and Joe D. J. O'Neil (1996) Backbone dynamics of an alamethicin in methanol and aqueous detergent solution determined by heteronuclear ¹H-¹⁵N NMR spectroscopy. J. Biomol. NMR 7, 2 83-294.

• Adelinda. A. Yee, Randy Babiuk, and Joe D. J. O'Neil (1995) The Conformation of an alamethicin in methanol by multinuclear NMR spectroscopy and distance geometry / simulated annealing. Biopolymers 36, 781-792.

• Nancy Poppe-Schriemer, Werner Ens, Joe D. J. O'Neil, V. Spicer, Kenneth. G. Standing, John. B. Westmore, and Adelinda A. Yee (1995) Structural Measurements on Several Alamethicin Peptides by the Time-of-Flight Correlation Technique. Int. J. Mass Spectrom. Ion Processes 143, 65-86.

• Leo Spyracopoulos and Joe D. J. O'Neil Effect of a hydrophobic environment on the hydrogen exchange rates of model amides determined by ¹H-NMR spectroscopy. (1994) J . Am. Chem. Soc. 116, 1395-1402.

• John L. Wylie, Christine Bernegger-Egli, Joe D. J. O'Neil, and Elizabeth A. Worobec (1993) Biophysical characterization of OprB, a glucose inducible porin of Pseudomonas aeruginosa. J. Bioenerget. Biomemb. 25, 547-556.

• Adelinda A. Yee and Joe D. J. O'Neil (1992) Uniform labelling of a fungal peptide: the structure and dynamics of an alamethicin by ¹⁵N and ¹H NMR spectroscopy. Biochemistry 31, 3135-3143.