FSAP
The Fristensky Sequence Analysis Package (formerly Cornell Sequence
Analysis
Package) has proven to be a versatile, reliable, and highly portable
suite
of programs for sequence analysis. At the heart of the package is
NUMSEQ
a sequence manipulation program that provides a large number of options
for presentation of sequence data, as well as facilitating simulation
of
operations such as translation, subcloning and ligation.
Restriction
search programs predict fragments and ends from single or
multiple,
complete or parital digests . Rapid
matrix
similarity searches perform quantititive comparisons of nucleic
acid
and protein sequences. Programs for
electrophoresis
fragment size estimation and
ORF
analysis are also provided. Programs are compatible with the
IUPAC-IUB
ambiguity conventions , and can read a wide variety of sequence
file
formats.
References:
Fristensky, B., Lis, J.T. and Wu, R. (1982) Portable microcomputer
software for nucleotide sequence analysis. Nucleic Acids Research
10:6451-6463.
Fristensky, B. (1986) Improving the efficiency of dot-matrix
similarity
searches through use of an oligomer table. Nucleic Acids Research
14:597-610.
Most FSAP programs can now be run from
Genetic
Data Environment (GDE) of Steven Smith.
C code is now available for the following platforms and compilers:
Solaris-sparc
Linux-Intel
Solaris-AMD
Code may run with other comilers as well.
Download compressed tar files
This file contains source code, documentation and binaries for all
platforms.
The following files are DOS self extracting archives.
Go
to BIRCH home page