Protein Distance Matrix Phylogeny Methods --------------------- DISTANCE MATRIX --------------------- Distance matrix constructed using Jones-Taylor-Thornton method --------------------- CONSTRUCTING TREE(S) --------------------- JUMBLING SEQUENCE ORDER 1 ITERATIONS, SEED=36701 12 Populations Fitch-Margoliash method version 3.63 __ __ 2 \ \ (Obs - Exp) Sum of squares = /_ /_ ------------ 2 i j Obs Negative branch lengths not allowed global optimization +-------PSTCHIT ! ! +----CUSSEQ_3 ! +-10 ! +----------7 +---CUSSEQ_1 ! ! ! ! ! +-CUSSEQ_2 ! +-4 ! ! ! +-----------S66038 ! ! ! ! ! ! +-9 +-----------VURNACH3B ! ! ! +---8 ! ! ! ! +-------------ATHCHIA 5-1 +-6 ! ! ! +-------------------NTBASICL3 ! ! +-2 ! ! +----------NTACIDCL3 ! ! ! ! +-VIRECT ! +------3 ! +--VURNACH3A ! +-------CACHIT remember: this is an unrooted tree! Sum of squares = 0.29219 Average percent standard deviation = 4.74091 Between And Length ------- --- ------ 5 PSTCHIT 0.13002 5 1 0.04116 1 4 0.02765 4 7 0.17896 7 10 0.00601 10 CUSSEQ_3 0.07609 10 CUSSEQ_1 0.05960 7 CUSSEQ_2 0.04142 4 9 0.01795 9 S66038 0.19648 9 6 0.01941 6 8 0.05264 8 VURNACH3B 0.21515 8 ATHCHIA 0.23581 6 2 0.02993 2 NTBASICL3 0.33010 2 NTACIDCL3 0.17337 1 3 0.10512 3 VIRECT 0.03927 3 VURNACH3A 0.05035 5 CACHIT 0.12986 Execution times on smith: 0.0u 0.0s 0:00 0% 0+0k 0+0io 0pf+0w