DNAML
 
 
JUMBLING SEQUENCE ORDER 1 ITERATIONS, SEED=9221

Nucleic acid sequence Maximum Likelihood method, version 3.63


Empirical Base Frequencies:

   A       0.25559
   C       0.24475
   G       0.23579
  T(U)     0.26388

Transition/transversion ratio =   2.000000

User-defined tree:


  +--------PSTCHIT   
  |  
  |                            +--CUSSEQ_3  
  |                         +-10  
  |        +----------------9  +--CUSSEQ_1  
  |        |                |  
  |   +----2                +-CUSSEQ_2  
  |   |    |  
  |   |    |      +-VIRECT    
  |   |    +------1  
  |   |           +--VURNACH3A 
  |   |  
  8---3           +-------------------NTBASICL3 
  |   |        +--6  
  |   |        |  |     +--------------ATHCHIA   
  |   |    +---5  +-----7  
  |   |    |   |        +-------------VURNACH3B 
  |   +----4   |  
  |        |   +------------NTACIDCL3 
  |        |  
  |        +--------------S66038    
  |  
  +----------CACHIT    


remember: this is an unrooted tree!

Ln Likelihood = -7100.58647

 Between        And            Length      Approx. Confidence Limits
 -------        ---            ------      ------- ---------- ------

     8          CACHIT            0.18427     (  0.14360,     0.22495) **
     8          PSTCHIT           0.15338     (  0.11579,     0.19090) **
     8             3              0.06366     (  0.03188,     0.09549) **
     3             2              0.08926     (  0.05358,     0.12495) **
     2             9              0.27943     (  0.22659,     0.33225) **
     9            10              0.00861     (     zero,     0.01910) *
    10          CUSSEQ_3          0.03501     (  0.02064,     0.04935) **
    10          CUSSEQ_1          0.03584     (  0.02138,     0.05030) **
     9          CUSSEQ_2          0.02704     (  0.01325,     0.04084) **
     2             1              0.12011     (  0.08334,     0.15696) **
     1          VIRECT            0.02928     (  0.01359,     0.04493) **
     1          VURNACH3A         0.04964     (  0.03105,     0.06823) **
     3             4              0.08198     (  0.04708,     0.11699) **
     4             5              0.06701     (  0.03375,     0.10031) **
     5             6              0.03709     (  0.00899,     0.06511) **
     6          NTBASICL3         0.32799     (  0.26703,     0.38900) **
     6             7              0.09252     (  0.05328,     0.13175) **
     7          ATHCHIA           0.26025     (  0.20748,     0.31309) **
     7          VURNACH3B         0.24921     (  0.19733,     0.30108) **
     5          NTACIDCL3         0.22492     (  0.17727,     0.27256) **
     4          S66038            0.25430     (  0.20315,     0.30545) **

     *  = significantly positive, P < 0.05
     ** = significantly positive, P < 0.01



Execution times on deneb: 0.0u 0.0s 0:00 0% 0+0k 0+0io 0pf+0w