DNAPARS
 
Search option: THOROUGH
RESAMPLING: Bootstrap, 100 REPLICATES, SEED=57307
JUMBLING SEQUENCE ORDER 5 ITERATIONS, SEED=29065

DNA parsimony algorithm, version 3.63



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Execution times on deneb: 381.0u 0.0s 6:23 99% 0+0k 0+0io 0pf+0w
 
-------------------------------------------

Consensus tree program, version 3.63

Species in order: 

  1. VURNACH3A
  2. VIRECT
  3. CUSSEQ 3
  4. CUSSEQ 2
  5. CUSSEQ 1
  6. VURNACH3B
  7. NTBASICL3
  8. ATHCHIA
  9. S66038
  10. NTACIDCL3

  11. PSTCHIT
  12. CACHIT


Sets included in the consensus tree

Set (species in order)     How many times out of  100.00

..******** **               100.00
..***..... ..               100.00
.......... **               91.03
.....*.*.. ..               90.47
.....***** **               75.53
..*.*..... ..               70.75
.....***** ..               46.28
.....***.. ..               38.57
.....***.* ..               32.63


Sets NOT included in consensus tree:

Set (species in order)     How many times out of  100.00

.....***.* **               25.18
......*..* ..               23.77
......*..* **               20.03
.....*.*** ..               17.67
..**...... ..               17.42
........** ..               16.67
.....*.**. ..               16.17
..***...*. ..               12.13
...**..... ..               11.83
..******** ..                9.58
........** **                7.67
..***...** ..                7.00
......*.** **                6.92
.....***** .*                6.67
.....*.*.* ..                6.00
......**.. ..                5.00
......*.** ..                5.00
..***.*.** **                4.83
..***.*.** ..                4.50
......**** **                4.33
.....*.*.. **                3.50
......**** ..                3.33
......*... **                3.00
..****.**. ..                2.95
......**.* ..                2.03
.......*** ..                2.00
.....***.. **                2.00
.....*.*.* **                1.50
......*..* .*                1.20
.....***.* .*                1.10
........*. **                1.00
..***.**** **                1.00
..***..... **                1.00
.........* **                0.50
..******.* **                0.25


Extended majority rule consensus tree

CONSENSUS TREE:
the numbers on the branches indicate the number
of times the partition of the species into the two sets
which are separated by that branch occurred
among the trees, out of 100.00 trees

                                            +-------------NTBASICL3
                                     +-38.6-|
                                     |      |      +------ATHCHIA
                              +-32.6-|      +-90.5-|
                              |      |             +------VURNACH3B
                       +-46.3-|      |
                       |      |      +--------------------NTACIDCL3
                       |      |
                +-75.5-|      +---------------------------S66038
                |      |
                |      |                           +------CACHIT
                |      +----------------------91.0-|
         +-100.0-|                                  +------PSTCHIT
         |      |
         |      |                                  +------CUSSEQ 3
         |      |                           +-70.7-|
  +------|      +----------------------100.0-|      +------CUSSEQ 1
  |      |                                  |
  |      |                                  +-------------CUSSEQ 2
  |      |
  |      +------------------------------------------------VIRECT
  |
  +-------------------------------------------------------VURNACH3A


  remember: this is an unrooted tree!



>>>> THIS TREEFILE IS A CONSENSUS TREE
>>>> TO GENERATE BRANCH LENGTHS
>>>> USE TREE FILE AS INPUT FOR DNAML OR OTHER PROGRAM
>>>> USING THE USERTREE OPTION