category: Sequence - Multiple Alignment
programs:
blnalign - biolegato interface for working with multiple DNA/RNA alignments
blpalign - biolegato interface for working with multiple protein alignments
boxshade - Multiple alignment display
clu2ig - Translate multiply aligned sequences in clustal format to Intelligenetics format
clustalw - Multiple sequence alignment
clustalx - Multiple sequence alignment and editing
dialign-tx - segment-based multiple alignment
gde - Genetic Data Environment
Jalview - Multiple alignment viewer
mafft - Multiple sequence alignment by fast Fourier Transformation
MakeCons - Create a consensus sequence from a multiple alignment
mrtrans - Align DNA sequences to a protein multiple alignment
pima - Pattern-induced multiple sequence alignment
reform - print a multiple alignment using plain text
tcoffee - Multiple sequence alignment