category: Sequence - Multiple Alignment

programs:

• blnalign - biolegato interface for working with multiple DNA/RNA alignments
• blpalign - biolegato interface for working with multiple protein alignments
• boxshade - Multiple alignment display
• clu2ig - Translate multiply aligned sequences in clustal format to Intelligenetics format
• clustalw - Multiple sequence alignment
• clustalx - Multiple sequence alignment and editing
• dialign-tx - segment-based multiple alignment
• gde - Genetic Data Environment
• Jalview - Multiple alignment viewer
• mafft - Multiple sequence alignment by fast Fourier Transformation
• MakeCons - Create a consensus sequence from a multiple alignment
• mrtrans - Align DNA sequences to a protein multiple alignment
• pima - Pattern-induced multiple sequence alignment
• reform - print a multiple alignment using plain text
• tcoffee - Multiple sequence alignment