Package: BIRCH

BIRCH - Biological Research Computing Hierarchy
Documentation
Data
Platforms: solaris-sparc, linux-intel, solaris-amd64, linux-x86_64, osx-x86_64
Installation: BIRCH
Programs:
birchconfig - BIRCH install wizard birchdb - BIRCH documentation database birchhome.sh - modify paths in BIRCH parameter files for local BIRCH system birchstats - Report statistics on BIRCH usage browser.csh - Launch a default browser from another application btail.csh - Print the contents of a file beginning at line x csv2phyl.sh - >>> csv2phyl.sh is obsolete. Instead, use phylcnv.py which handles a larger number of file formats customdoc.py - String substitution for HTML files dat2ace.py - Create ACeDB file objects for all data files in a directory doc2ace.py - Create ACeDB file objects for all documenataion files in a directory fil.py - create .fil files for use by FASTA gbupdate - download and update GenBank flatfile database htmldoc.py - Create BIRCH HTML documentation from BIRCH and local databases l-gbirchdb - >>>>It is used for editing the copy of lbirchdb in local-generic. When a NEW BIRCH install is done, this empty database becomes the lbirchdb database. lbirchdb - Database for local documentation makemenus.py - (deprecated) Create .GDEmenus files for all platforms phylip.py - Classes used by Python scripts that run Phylip programs pirupdate - download and update PIR flatfile database pyc.py - compile a Python script into bytecode ruler - Print a text ruler for use in numbering columns UNINSTALL-birch.sh - Uninstall a BIRCH system