birch - blastdbkit.py


blastdbkit.py - Install and update local BLAST databases
Launching the program
command
blastdbkit.py --configure [ --birchdir directory --blastdb directory ]
command
blastdbkit.py --reportlocal
command
blastdbkit.py --reportftp [--ftpsite url ]
command
blastdbkit.py --addfiles [ --ftpsite url ] --dblist db[,db]
command
blastdbkit.py --deletefiles --dblist db[,db]
command
blastdbkit.py --updatedb [ --ftpsite url ] --dblist db[,db]
birchadmin
UpdateAddInstall --> BlastDB
Documentation
Manual
$doc/bioLegato/blastdbkit.html
Tutorial
$doc/BIRCH/birchadmin/blastdb/BLASTDB.html
Technical reference
$doc/BIRCH/birchadmin/blastdb/BLASTDBTechnical.html
Pydoc documentation
$doc/bioLegato/blastdbkit.pydoc.html
Data
Sample input
Sample output
Package: bioLegato
Platforms: linux-intel, linux-x86_64, osx-x86_64