birch - v_demograph


v_demograph - Estimates demographic parameters (effective population size, growth rate) by maximizing the coalescent prior for a single given clocklike tree.
Launching the program
command
v_demograph intree [epsilon] outfile
Documentation
$local/doc/vanilla/index.html
Data
Sample input
$local/dat/vanilla/amniotes.tree
$local/dat/vanilla/atp6.tree
$local/dat/vanilla/cyt-b.tree
$local/dat/vanilla/dengue.tree
$local/dat/vanilla/globin.tree
Sample output
Package: vanilla
Platforms: solaris-sparc, solaris-amd64, linux-intel