name "extract"
icon "$BIRCH/public_html/images/birch_black_ico.png"
tip "open a new BioLegato window with the selected sequences"
var "in1"
type tempfile
direction in
format fasta
save true
var "in2"
type tempfile
direction in
format genbank
save true
#Note: extract uses gde as the output format in all other
# bioLegato instances. We use genbank format here because
# the bioLegato 0.8.0 does not save GenBank annotation in gde format.
# The trade off is that comments are not preserved. See BIRCH
# bugzilla bug #1189 for further discussion.
panel
var "Run1"
type button
label "Extract fasta - sequences only"
shell "(blprotein %in1%;$RM_CMD -f %in1%)&"
close true
var "Run2"
type button
label "Extract GenBank entries"
shell "(blprotein %in2%;$RM_CMD -f %in2%)&"
close true