//Copyright 2017 Ryan Wick
//This file is part of Bandage
//Bandage is free software: you can redistribute it and/or modify
//it under the terms of the GNU General Public License as published by
//the Free Software Foundation, either version 3 of the License, or
//(at your option) any later version.
//Bandage is distributed in the hope that it will be useful,
//but WITHOUT ANY WARRANTY; without even the implied warranty of
//MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
//GNU General Public License for more details.
//You should have received a copy of the GNU General Public License
//along with Bandage. If not, see .
#ifndef QUERYPATHS_H
#define QUERYPATHS_H
#include
#include "../ui/mainwindow.h"
#include
#include
int bandageQueryPaths(QStringList arguments);
void printQueryPathsUsage(QTextStream * out, bool all);
QString checkForInvalidQueryPathsOptions(QStringList arguments);
void parseQueryPathsOptions(QStringList arguments, bool *pathFasta,
bool * hitsFasta);
#endif // QUERYPATHS_H