/*
 * inc/io_func.h
 *
 * Copyright (c) 2008-2016 Ruibang Luo <aquaskyline.com>.
 *
 * This file is part of SOAPdenovo.
 *
 * SOAPdenovo is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * SOAPdenovo is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with SOAPdenovo.  If not, see <http://www.gnu.org/licenses/>.
 *
 */


#ifndef _IO_FUNC_H
#define _IO_FUNC_H

#include "stdinc.h"
#include "global.h"

struct io_para_main
{
  int read_buf_sz;
  vector<string> *in_filenames_vt;

};

void sendIOWorkSignal();
void *run_io_thread_main ( void *arg );
void filter_N ( string &seq_s, int &bad_flag );
void read_lib ( vector<string> &filenames, char *lib_file );
void *open_file_robust ( const char *filetype, const char *path, const char *mode );

#endif