/*
Pollux
Copyright (C) 2014 Eric Marinier
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see .
*/
#ifndef ERROROUTPUT_H
#define ERROROUTPUT_H
#include
#include "KMerHashTable.h"
#include "Utility.h"
#include "Reads.h"
#ifdef __cplusplus
extern "C" {
#endif
void writeKMerCounts(FILE* output,
unsigned long long int* sequence, unsigned int length,
KMerHashTable* kmers, unsigned int kmerSize);
void outputKMerCounts(FILE* output,
Reads** reads, unsigned int numInputFiles,
KMerHashTable* kmers, unsigned int kmerSize);
void outputReads(FILE* output, Reads* reads);
void outputRead(FILE* output, struct read* read);
void outputReadsFASTK(FILE* output, Reads* reads, KMerHashTable* kmers, unsigned int kmerSize);
#ifdef __cplusplus
}
#endif
#endif /* ERROROUTPUT_H */