/* * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should * be distributed with the code. If you do not have a copy, * see: * * http://www.gnu.org/copyleft/lesser.html * * Copyright for this code is held jointly by the individual * authors. These should be listed in @author doc comments. * * For more information on the BioJava project and its aims, * or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * * Created on Jun 19, 2008 * */ package performance; import java.io.*; import java.net.URL; import java.net.URLConnection; import java.util.zip.GZIPInputStream; import org.biojava.bio.seq.*; import org.biojava.bio.seq.db.*; import org.biojava.bio.seq.io.*; import org.biojava.bio.symbol.*; /** Read a FASTA file and print the length of all sequences in the file. * * @author David Huen * @author Andreas Prlic * @since 1.7 * @date Jun 19, 2008 * */ public class ReadFasta { /** * The program takes two args: the first is the file name of the Fasta file. * The second is the name of the Alphabet. Acceptable names are DNA RNA or PROTEIN. * @param args parameter array **/ public static void main(String[] args) { try { UserDisplay display = new UserDisplay(); display.setTitle("BioJava performance example"); display.setVisible(true); StringBuffer txt = new StringBuffer(); txt.append("
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