/* * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should * be distributed with the code. If you do not have a copy, * see: * * http://www.gnu.org/copyleft/lesser.html * * Copyright for this code is held jointly by the individual * authors. These should be listed in @author doc comments. * * For more information on the BioJava project and its aims, * or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * * Created on Jun 19, 2008 * */ package performance; import java.io.BufferedInputStream; import java.io.BufferedReader; import java.io.InputStream; import java.io.InputStreamReader; import java.net.URL; import java.net.URLConnection; import java.util.zip.GZIPInputStream; import org.biojavax.SimpleNamespace; import org.biojavax.bio.seq.RichSequence; import org.biojavax.bio.seq.RichSequenceIterator; /** Read a FASTA file and print the length of all sequences in the file. * Uses the slower biojavax implementation. * * @author Andreas Prlic * @since 1.7 * @date Jun 19, 2008 */ public class ReadFastaX { public static void main (String[] args){ try { UserDisplay display = new UserDisplay(); display.setTitle("BioJava performance example - BioJavaX"); display.setVisible(true); StringBuffer txt = new StringBuffer("
"); txt.append("