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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| mafftdir/ | 2022-07-24 14:08 | - | |
| abyss-kaligner | 2019-05-16 16:40 | 39 | |
| l4 | 2008-05-14 11:42 | 111 | |
| fastfiles | 2014-09-29 19:58 | 129 | |
| makelinks.sh | 2014-09-29 19:59 | 139 | |
| abyss-tabtomd | 2019-05-16 16:40 | 209 | |
| VERSIONS | 2002-11-08 19:36 | 225 | |
| ABYSS-P | 2019-05-16 16:40 | 232 | |
| newlinks2.txt | 2014-10-08 13:26 | 247 | |
| weblogo.old | 2020-02-01 16:00 | 382 | |
| transformseq | 2020-02-01 14:55 | 392 | |
| abyss-stack-size | 2019-05-16 16:40 | 671 | |
| abyss-db-txt | 2019-05-16 16:40 | 703 | |
| mocca | 2001-07-11 16:40 | 708 | |
| abyss-bowtie | 2019-05-16 16:40 | 1.1K | |
| transrate | 2016-06-06 08:37 | 1.1K | |
| abyss-bowtie2 | 2019-05-16 16:40 | 1.2K | |
| abyss-bwa | 2019-05-16 16:40 | 1.2K | |
| abyss-bwasw | 2019-05-16 16:40 | 1.3K | |
| abyss-bwamem | 2019-05-16 16:40 | 1.4K | |
| spades_init.py | 2023-07-10 17:37 | 1.6K | |
| abyss-fatoagp | 2019-05-16 16:40 | 2.0K | |
| hisat2-inspect | 2016-03-12 11:25 | 2.3K | |
| newlinks1.txt | 2014-10-08 13:26 | 2.4K | |
| abyss-dida | 2019-05-16 16:40 | 2.7K | |
| bowtie2-inspect | 2019-04-16 21:50 | 2.7K | |
| hisat2-build | 2016-03-12 11:25 | 2.7K | |
| bowtie2-build | 2019-04-16 21:50 | 2.8K | |
| abyss-samtoafg | 2019-05-16 16:40 | 4.4K | |
| get_species_taxids.sh | 2021-05-12 09:35 | 4.6K | |
| font1 | 2012-03-11 17:11 | 5.8K | |
| cleanup-blastdb-volu..> | 2019-08-07 09:59 | 6.1K | |
| abyss-bloom-dist.mk | 2019-05-16 16:40 | 6.3K | |
| run_rcorrector.pl | 2017-04-14 21:33 | 7.1K | |
| nquire | 2014-10-06 16:25 | 7.2K | |
| truspades.py | 2023-07-10 18:17 | 8.8K | |
| font2 | 2012-03-11 17:11 | 11K | |
| font4 | 2012-03-11 17:11 | 11K | |
| update_blastdb.pl.or..> | 2014-09-11 07:12 | 12K | |
| font6 | 2012-03-11 17:11 | 14K | |
| extract_from_pdb | 2001-07-11 16:40 | 14K | |
| Zuk_to_gen | 2002-01-21 03:06 | 15K | |
| font5 | 2012-03-11 17:11 | 16K | |
| fromgb | 2002-11-08 17:17 | 17K | |
| font3 | 2012-03-11 17:11 | 17K | |
| varpos | 2002-01-21 03:06 | 17K | |
| sho_helix | 2002-01-21 03:06 | 17K | |
| fastq_pair | 2019-03-12 09:08 | 17K | |
| hisat2 | 2017-06-07 14:49 | 18K | |
| findall | 2002-01-21 03:06 | 18K | |
| Restriction | 2002-01-21 03:06 | 19K | |
| cuffmerge | 2014-05-05 21:29 | 19K | |
| bowtie2 | 2019-04-16 21:50 | 19K | |
| newlinks.tar | 2014-10-08 13:30 | 20K | |
| count | 2002-01-21 03:06 | 20K | |
| mrtrans | 2007-06-07 19:53 | 21K | |
| abyss-pe | 2023-11-20 19:28 | 22K | |
| last-merge-batches | 2023-11-12 17:55 | 23K | |
| shuffle | 2007-06-03 21:15 | 29K | |
| metaspades.py | 2023-07-10 17:37 | 30K | |
| plasmidspades.py | 2023-07-10 17:37 | 30K | |
| rnaspades.py | 2023-07-10 17:37 | 30K | |
| spades.py | 2023-07-10 17:37 | 30K | |
| libDtPrint.so.1 | 2007-06-07 20:06 | 32K | |
| libDtPrint.so.1.0.0 | 2007-06-07 20:06 | 32K | |
| CAP2 | 2002-01-21 03:06 | 33K | |
| update_blastdb.pl.old | 2023-02-23 09:35 | 33K | |
| lav2svg | 2008-10-24 11:51 | 35K | |
| map_db | 2023-05-23 09:58 | 35K | |
| digest | 2001-08-14 20:06 | 35K | |
| update_blastdb.pl | 2024-04-17 08:16 | 36K | |
| lav2ps | 2010-03-11 13:27 | 37K | |
| long_seq_tm_test | 2023-06-06 09:06 | 38K | |
| lalign2list | 2004-05-15 19:45 | 38K | |
| bestscor | 2002-11-08 17:17 | 39K | |
| lsadt | 2002-01-21 03:06 | 39K | |
| LoopTool | 2002-01-21 03:06 | 40K | |
| tgrease | 2002-11-08 17:17 | 41K | |
| psgrease | 2002-11-08 17:17 | 42K | |
| relate | 2002-11-08 17:17 | 44K | |
| oligotm | 2023-06-06 09:06 | 44K | |
| grease | 2008-04-01 13:04 | 50K | |
| legacy_blast.pl | 2020-05-26 10:41 | 50K | |
| cd-hit-lap | 2020-06-15 18:13 | 55K | |
| garnier | 2008-04-01 13:04 | 60K | |
| pollux | 2018-01-25 17:47 | 61K | |
| weighbor | 2007-06-07 18:02 | 62K | |
| ntdpal | 2023-06-06 09:06 | 65K | |
| flalign | 2002-11-08 17:17 | 69K | |
| Gblocks | 2011-04-29 15:58 | 69K | |
| plalign | 2002-11-08 17:17 | 72K | |
| gendist | 2012-03-11 17:11 | 77K | |
| plfasta | 2002-11-08 17:17 | 80K | |
| factor | 2012-03-11 17:11 | 81K | |
| cd-hit-dup | 2020-06-15 18:13 | 86K | |
| rcorrector | 2023-12-05 13:38 | 88K | |
| neighbor | 2012-03-11 17:11 | 91K | |
| contrast | 2012-03-11 17:11 | 92K | |
| Consto01mask | 2003-02-20 12:40 | 97K | |
| last-pair-probs | 2023-11-12 17:55 | 97K | |
| heapsortHGL | 2003-02-20 12:39 | 98K | |
| align | 2008-04-01 13:04 | 98K | |
| MakeCons | 2003-02-20 12:39 | 100K | |
| align0 | 2008-04-01 13:04 | 100K | |
| PrintStrat | 2003-02-20 12:40 | 101K | |
| consense | 2012-03-11 17:11 | 103K | |
| kitsch | 2012-03-11 17:11 | 104K | |
| libMrm.so.2 | 2007-06-07 20:06 | 106K | |
| libMrm.so.2.0.1 | 2007-06-07 20:06 | 106K | |
| dolpenny | 2012-03-11 17:11 | 107K | |
| fitch | 2012-03-11 17:11 | 111K | |
| clique | 2012-03-11 17:11 | 112K | |
| treedist | 2012-03-11 17:11 | 112K | |
| gmon.out | 2021-09-20 11:19 | 112K | |
| contml | 2012-03-11 17:11 | 112K | |
| dollop | 2012-03-11 17:11 | 116K | |
| penny | 2012-03-11 17:11 | 116K | |
| prdf | 2008-04-01 13:04 | 122K | |
| mix | 2012-03-11 17:11 | 124K | |
| dolmove | 2012-03-11 17:11 | 126K | |
| libUil.so.2 | 2007-06-07 20:06 | 130K | |
| libUil.so.2.0.1 | 2007-06-07 20:06 | 130K | |
| move | 2012-03-11 17:11 | 138K | |
| pigz | 2018-02-01 11:20 | 142K | |
| unpigz | 2018-02-01 11:20 | 142K | |
| retree | 2012-03-11 17:11 | 144K | |
| ntthal | 2010-03-23 16:07 | 146K | |
| dialign-tx | 2009-02-18 18:53 | 155K | |
| cd-hit | 2020-06-15 18:12 | 161K | |
| cd-hit-div | 2020-06-15 18:12 | 165K | |
| cd-hit-est | 2020-06-15 18:12 | 165K | |
| cd-hit-2d | 2020-06-15 18:12 | 165K | |
| cd-hit-est-2d | 2020-06-15 18:12 | 165K | |
| cd-hit-454 | 2020-06-15 18:12 | 165K | |
| restdist | 2012-03-11 17:11 | 165K | |
| dnainvar | 2012-03-11 17:11 | 166K | |
| dnapenny | 2012-03-11 17:11 | 167K | |
| lfasta | 2008-04-01 13:04 | 168K | |
| pars | 2012-03-11 17:11 | 170K | |
| drawgram | 2012-03-11 17:11 | 173K | |
| dnacomp | 2012-03-11 17:11 | 175K | |
| dnadist | 2012-03-11 17:11 | 178K | |
| seqboot | 2012-03-11 17:11 | 180K | |
| velveth | 2016-06-15 15:13 | 180K | |
| dnapars | 2012-03-11 17:11 | 184K | |
| drawtree | 2012-03-11 17:11 | 190K | |
| protpars | 2012-03-11 17:11 | 191K | |
| protdist | 2012-03-11 17:11 | 193K | |
| dnamove | 2012-03-11 17:11 | 201K | |
| dnaml | 2012-03-11 17:11 | 205K | |
| dnamlk | 2012-03-11 17:11 | 209K | |
| restml | 2012-03-11 17:11 | 209K | |
| proml | 2012-03-11 17:11 | 219K | |
| promlk | 2012-03-11 17:11 | 229K | |
| treetool.bin | 2002-01-11 05:34 | 241K | |
| last-split | 2023-11-12 17:55 | 255K | |
| SOAPdenovo-fusion | 2019-04-05 17:01 | 286K | |
| SOAPdenovo-fusion_v2..> | 2019-04-05 17:01 | 286K | |
| lastdb | 2023-11-12 17:54 | 352K | |
| spades-bwa | 2022-02-01 05:18 | 371K | |
| velvetg | 2016-06-15 15:13 | 384K | |
| fasta | 2023-05-23 09:57 | 468K | |
| fasta3 | 2023-05-23 09:57 | 468K | |
| fasta36 | 2023-05-23 09:57 | 468K | |
| fastf3 | 2023-05-23 09:58 | 558K | |
| fastf36 | 2023-05-23 09:58 | 558K | |
| ssearch | 2023-05-23 09:57 | 565K | |
| ssearch3 | 2023-05-23 09:57 | 565K | |
| ssearch36 | 2023-05-23 09:57 | 565K | |
| fastm3 | 2023-05-23 09:58 | 565K | |
| fastm36 | 2023-05-23 09:58 | 565K | |
| fasts3 | 2023-05-23 09:57 | 566K | |
| fasts36 | 2023-05-23 09:57 | 566K | |
| tfastf3 | 2023-05-23 09:58 | 574K | |
| tfastf36 | 2023-05-23 09:58 | 574K | |
| tfasts3 | 2023-05-23 09:58 | 581K | |
| tfasts36 | 2023-05-23 09:58 | 581K | |
| fastx3 | 2023-05-23 09:57 | 591K | |
| fastx36 | 2023-05-23 09:57 | 591K | |
| tfastx3 | 2023-05-23 09:57 | 593K | |
| tfastx36 | 2023-05-23 09:57 | 593K | |
| fasty3 | 2023-05-23 09:57 | 602K | |
| fasty36 | 2023-05-23 09:57 | 602K | |
| tfasty3 | 2023-05-23 09:58 | 603K | |
| tfasty36 | 2023-05-23 09:58 | 603K | |
| tfastm3 | 2023-05-23 09:58 | 605K | |
| tfastm36 | 2023-05-23 09:58 | 605K | |
| abyss-tofastq | 2019-05-16 16:40 | 654K | |
| gffcompare | 2018-02-15 13:24 | 698K | |
| ggsearch3 | 2023-05-23 09:58 | 703K | |
| ggsearch36 | 2023-05-23 09:58 | 703K | |
| glsearch3 | 2023-05-23 09:58 | 707K | |
| glsearch36 | 2023-05-23 09:58 | 707K | |
| logcounter | 2019-05-16 16:41 | 740K | |
| acediff | 2003-07-01 10:39 | 762K | |
| lalign | 2023-05-23 09:57 | 783K | |
| lalign3 | 2023-05-23 09:57 | 783K | |
| lalign36 | 2023-05-23 09:57 | 783K | |
| zsh | 2018-06-13 09:33 | 787K | |
| SOAPdenovo-63mer | 2019-04-05 17:01 | 817K | |
| SOAPdenovo-63mer_v2...> | 2019-04-05 17:01 | 817K | |
| Consensus | 2019-05-16 16:41 | 837K | |
| abyss-index | 2019-05-16 16:41 | 868K | |
| abyss-fac | 2019-05-16 16:40 | 911K | |
| abyss-longseqdist | 2019-05-16 16:41 | 919K | |
| abyss-mergepairs | 2019-05-16 16:40 | 931K | |
| primer3 | 2023-06-06 09:06 | 940K | |
| primer3_core | 2023-06-06 09:06 | 940K | |
| abyss-gc | 2019-05-16 16:40 | 945K | |
| abyss-db-csv | 2019-05-16 16:40 | 958K | |
| SOAPdenovo-127mer | 2019-04-05 17:01 | 1.0M | |
| SOAPdenovo-127mer_v2..> | 2019-04-05 17:01 | 1.0M | |
| dotter | 2016-09-21 18:08 | 1.0M | |
| ParseAligns | 2019-05-16 16:41 | 1.0M | |
| DAssembler | 2019-05-16 16:41 | 1.0M | |
| mb.bin | 2007-06-07 18:05 | 1.1M | |
| abyss-align | 2019-05-16 16:40 | 1.1M | |
| funnel | 2023-09-26 11:56 | 1.1M | |
| gel | 2023-09-26 11:56 | 1.1M | |
| multidigest | 2023-09-26 12:53 | 1.1M | |
| abyss-junction | 2019-05-16 16:41 | 1.1M | |
| p1hom | 2023-09-26 11:56 | 1.1M | |
| p2hom | 2023-09-26 11:56 | 1.1M | |
| d4hom | 2023-09-26 11:56 | 1.1M | |
| d3hom | 2023-09-26 11:56 | 1.1M | |
| giganumseq | 2023-09-26 11:56 | 1.1M | |
| testcode | 2023-09-26 11:56 | 1.1M | |
| numseq | 2023-09-26 11:56 | 1.1M | |
| bachrest | 2023-09-26 11:56 | 1.1M | |
| abyss-gapfill | 2019-05-16 16:41 | 1.2M | |
| lastal | 2023-11-12 17:55 | 1.4M | |
| libXm.so.2 | 2007-06-07 20:06 | 1.5M | |
| libXm.so.2.0.1 | 2007-06-07 20:06 | 1.5M | |
| abyss-layout | 2019-05-16 16:41 | 1.6M | |
| SOAPdenovo-Trans-31mer | 2019-04-08 12:04 | 1.6M | |
| SOAPdenovo-Trans-31m..> | 2019-04-08 12:04 | 1.6M | |
| abyss-todot | 2019-05-16 16:40 | 1.6M | |
| abyss-fixmate | 2019-05-16 16:41 | 1.7M | |
| abyss-fixmate-ssq | 2019-05-16 16:41 | 1.7M | |
| gffread | 2014-05-05 21:29 | 1.7M | |
| SOAPdenovo-Trans-127mer | 2019-04-08 12:05 | 1.8M | |
| SOAPdenovo-Trans-127..> | 2019-04-08 12:05 | 1.8M | |
| xylem_shuffle | 2023-05-22 13:07 | 1.8M | |
| getloc | 2023-05-22 13:07 | 1.8M | |
| splitdb | 2024-06-17 17:01 | 1.8M | |
| reform | 2023-05-22 13:07 | 1.8M | |
| ribosome | 2024-06-17 10:34 | 1.8M | |
| prot2nuc | 2023-05-22 13:07 | 1.8M | |
| getob | 2024-06-16 14:47 | 1.9M | |
| KAligner | 2019-05-16 16:41 | 1.9M | |
| spades-convert-bin-t..> | 2022-02-01 05:18 | 1.9M | |
| tagcount | 2003-07-01 10:39 | 1.9M | |
| abyss-filtergraph | 2019-05-16 16:41 | 2.0M | |
| DistanceEst | 2019-05-16 16:41 | 2.0M | |
| Overlap | 2019-05-16 16:41 | 2.1M | |
| abyss-overlap | 2019-05-16 16:41 | 2.1M | |
| taql | 2003-07-01 10:39 | 2.1M | |
| DistanceEst-ssq | 2019-05-16 16:41 | 2.1M | |
| abyss-map | 2019-05-16 16:41 | 2.1M | |
| PathOverlap | 2019-05-16 16:41 | 2.2M | |
| abyss-map-ssq | 2019-05-16 16:41 | 2.2M | |
| abyss-bloom | 2019-05-16 16:40 | 2.2M | |
| corrector | 2017-09-27 19:33 | 2.2M | |
| hammer | 2017-09-27 19:33 | 2.2M | |
| tace | 2003-07-01 10:39 | 2.4M | |
| cuffcompare | 2014-05-05 21:29 | 2.4M | |
| spades-corrector-core | 2022-02-01 05:18 | 2.4M | |
| abyss-bloom-dbg | 2019-05-16 16:40 | 2.4M | |
| SimpleGraph | 2019-05-16 16:41 | 2.4M | |
| AdjList | 2019-05-16 16:41 | 2.4M | |
| Bandage | 2016-12-15 20:07 | 2.5M | |
| spades-kmercount | 2022-02-01 05:18 | 2.5M | |
| spades-hammer | 2022-02-01 05:18 | 2.5M | |
| asn2gb | 2004-11-09 08:55 | 2.5M | |
| PopBubbles | 2019-05-16 16:41 | 2.5M | |
| spades-kmer-estimating | 2022-02-01 05:18 | 2.5M | |
| abyss-sealer | 2019-05-16 16:41 | 2.5M | |
| konnector | 2019-05-16 16:40 | 2.6M | |
| ionhammer | 2017-09-27 19:33 | 2.7M | |
| MergePaths | 2019-05-16 16:41 | 2.8M | |
| spades-read-filter | 2022-02-01 05:18 | 2.8M | |
| MergeContigs | 2019-05-16 16:41 | 2.9M | |
| spades-ionhammer | 2022-02-01 05:18 | 3.0M | |
| ABYSS | 2019-05-16 16:40 | 3.1M | |
| spades-gbuilder | 2022-02-01 05:18 | 3.1M | |
| PathConsensus | 2019-05-16 16:41 | 3.1M | |
| spades-gsimplifier | 2022-02-01 05:18 | 3.1M | |
| abyss-scaffold | 2019-05-16 16:41 | 3.2M | |
| abyss-paired-dbg | 2019-05-16 16:41 | 3.2M | |
| scaffold_correction | 2017-09-27 19:33 | 3.4M | |
| jellyfish | 2023-07-07 14:30 | 3.6M | |
| jellyfish.2.3.0 | 2023-07-07 14:30 | 3.6M | |
| spades-truseq-scfcor..> | 2022-02-01 05:18 | 3.7M | |
| fastacmd | 2007-03-25 09:27 | 4.2M | |
| makemat | 2007-03-25 09:27 | 4.2M | |
| formatdb | 2007-03-25 09:27 | 4.2M | |
| impala | 2007-03-25 09:27 | 4.2M | |
| blastclust | 2007-03-25 09:27 | 4.2M | |
| seedtop | 2007-03-25 09:27 | 4.2M | |
| blastpgp | 2007-03-25 09:27 | 4.4M | |
| formatrpsdb | 2007-03-25 09:27 | 4.4M | |
| copymat | 2007-03-25 09:27 | 4.4M | |
| spades-gmapper | 2022-02-01 05:18 | 4.5M | |
| stringtie | 2018-03-06 10:30 | 4.5M | |
| xtract | 2020-07-15 16:20 | 4.5M | |
| clustalo | 2020-06-08 11:20 | 4.7M | |
| clustalo-1.2.4-Ubunt..> | 2020-06-08 11:20 | 4.7M | |
| megablast | 2007-03-25 09:27 | 4.8M | |
| bl2seq | 2007-03-25 09:27 | 5.0M | |
| bam-read | 2016-06-06 08:37 | 5.4M | |
| giface | 2003-07-01 10:39 | 5.9M | |
| samtools.1.12 | 2021-05-24 13:22 | 6.4M | |
| samtools | 2023-07-11 12:23 | 6.9M | |
| jellyfish.2.2.10 | 2019-03-10 14:47 | 8.0M | |
| cutadapt | 2022-05-10 17:14 | 8.1M | |
| spades-core | 2022-02-01 05:18 | 8.8M | |
| xace | 2003-07-01 10:39 | 9.6M | |
| snap-aligner | 2016-06-06 08:37 | 10M | |
| bowtie2-inspect-l-debug | 2019-04-16 21:52 | 12M | |
| bowtie2-inspect-s-debug | 2019-04-16 21:52 | 12M | |
| bowtie2-inspect-l | 2019-04-16 21:51 | 12M | |
| bowtie2-inspect-s | 2019-04-16 21:51 | 12M | |
| bowtie2-build-l | 2019-04-16 21:51 | 12M | |
| bowtie2-build-s | 2019-04-16 21:51 | 12M | |
| bowtie2-build-s-debug | 2019-04-16 21:52 | 15M | |
| bowtie2-build-l-debug | 2019-04-16 21:52 | 15M | |
| Cn3D | 2002-06-12 13:18 | 15M | |
| tbl2asn | 2020-03-01 14:57 | 15M | |
| tbl2asn.bin | 2020-03-01 14:57 | 15M | |
| sequin15.10 | 2016-03-01 13:13 | 17M | |
| seqkit | 2023-03-17 04:00 | 17M | |
| dustmasker | 2024-06-25 08:37 | 19M | |
| blastdb_aliastool | 2024-06-25 08:37 | 19M | |
| segmasker | 2024-06-25 08:37 | 20M | |
| makembindex | 2024-06-25 08:37 | 20M | |
| blastdbcheck | 2024-06-25 08:37 | 20M | |
| convert2blastmask | 2024-06-25 08:37 | 20M | |
| bowtie2-align-l | 2019-04-16 21:52 | 21M | |
| bowtie2-align-s | 2019-04-16 21:52 | 21M | |
| makeprofiledb | 2024-06-25 08:37 | 22M | |
| makeblastdb | 2024-06-25 08:37 | 22M | |
| windowmasker | 2024-06-25 08:37 | 24M | |
| blast_vdb_cmd | 2024-06-25 08:38 | 24M | |
| sequin.bin | 2017-02-22 07:33 | 25M | |
| sequin15.50 | 2017-02-22 07:33 | 25M | |
| blastdbcmd | 2024-06-25 08:37 | 27M | |
| gtf_to_sam | 2014-05-05 21:29 | 28M | |
| bowtie2-align-l-debug | 2019-04-16 21:54 | 28M | |
| bowtie2-align-s-debug | 2019-04-16 21:54 | 28M | |
| cuffquant | 2014-05-05 21:29 | 30M | |
| blast_formatter | 2024-06-25 08:37 | 31M | |
| tblastx | 2024-06-25 08:37 | 31M | |
| psiblast | 2024-06-25 08:37 | 31M | |
| blastp | 2024-06-25 08:37 | 31M | |
| blastn | 2024-06-25 08:37 | 31M | |
| blastx | 2024-06-25 08:37 | 31M | |
| tblastn | 2024-06-25 08:37 | 31M | |
| rpsblast | 2024-06-25 08:37 | 31M | |
| deltablast | 2024-06-25 08:37 | 31M | |
| rpstblastn | 2024-06-25 08:37 | 31M | |
| cuffnorm | 2014-05-05 21:29 | 32M | |
| cuffdiff | 2014-05-05 21:29 | 33M | |
| blast_formatter_vdb | 2024-06-25 08:38 | 36M | |
| blastn_vdb | 2024-06-25 08:37 | 36M | |
| tblastn_vdb | 2024-06-25 08:37 | 36M | |
| cufflinks | 2014-05-05 21:29 | 36M | |
| magicblast | 2019-08-20 18:00 | 41M | |