USAGE
  convert2blastmask [-h] [-help] [-in input_file_name] [-out output_file_name]
    [-outfmt output_format] [-parse_seqids]
    -masking_algorithm mask_program_name -masking_options mask_program_options
    [-version]

DESCRIPTION
   Convert masking information in lower-case masked FASTA input to file
   formats suitable for makeblastdb

REQUIRED ARGUMENTS
 -masking_algorithm <String>
   Masking algorithm name (e.g.: dust, seg, windowmasker, repeat). Use 'other'
   for user-defined type
 -masking_options <String>
   Masking algorithm options to create the masked input (free text to
   describe/include (command line) options used to create the masking)

OPTIONAL ARGUMENTS
 -h
   Print USAGE and DESCRIPTION;  ignore all other parameters
 -help
   Print USAGE, DESCRIPTION and ARGUMENTS; ignore all other parameters
 -in <File_In>
   Input file name
   Default = `-'
 -out <File_Out>
   Output file name
   Default = `-'
 -outfmt <String, `interval', `maskinfo_asn1_bin', `maskinfo_asn1_text',
                  `maskinfo_xml'>
   Output file format
   Default = `maskinfo_asn1_text'
 -parse_seqids
   Parse Seq-ids in FASTA input
 -version
   Print version number;  ignore other arguments