USAGE
  segmasker [-h] [-help] [-xmlhelp] [-in input_file_name]
    [-out output_file_name] [-infmt input_format] [-parse_seqids]
    [-outfmt output_format] [-window integer_value] [-locut float_value]
    [-hicut float_value] [-version-full] [-version-full-xml]
    [-version-full-json]

DESCRIPTION
   Low complexity region masker based on the SEG algorithm

OPTIONAL ARGUMENTS
 -h
   Print USAGE and DESCRIPTION;  ignore all other parameters
 -help
   Print USAGE, DESCRIPTION and ARGUMENTS; ignore all other parameters
 -xmlhelp
   Print USAGE, DESCRIPTION and ARGUMENTS in XML format; ignore all other
   parameters
 -version-full
   Print extended version data;  ignore other arguments
 -version-full-xml
   Print extended version data in XML format;  ignore other arguments
 -version-full-json
   Print extended version data in JSON format;  ignore other arguments

 *** Input/output options
 -in <File_In>
   input file name
   Default = `-'
 -out <File_Out>
   output file name
   Default = `-'
 -infmt <String, `blastdb', `fasta'>
   controls the format of the masker input
   Default = `fasta'
 -parse_seqids
   Parse Seq-ids in FASTA input
 -outfmt <String, `fasta', `interval', `maskinfo_asn1_bin',
                  `maskinfo_asn1_text', `maskinfo_xml', `seqloc_asn1_bin',
                  `seqloc_asn1_text', `seqloc_xml'>
   controls the format of the masker output
   Default = `interval'

 *** SEG algorithm options
 -window <Integer>
   SEG window
   Default = `12'
 -locut <Real>
   SEG locut
   Default = `2.2'
 -hicut <Real>
   SEG hicut
   Default = `2.5'