C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\BLASTGrabberApp.java | 46 | 17 | 12 | 1 | 8 | 0 | 21 | 86 | 3 | 3 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\BLASTparser.java | 220 | 192 | 147 | 51 | 19 | 0 | 9 | 32 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\BLASTprogram.java | 97 | 59 | 44 | 10 | 13 | 0 | 25 | 59 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Clipboard.java | 78 | 53 | 38 | 6 | 15 | 0 | 10 | 43 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\ClipboardCollection.java | 21 | 8 | 6 | 1 | 5 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\CubeSummaryCollection.java | 276 | 237 | 190 | 36 | 25 | 0 | 14 | 58 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\CubeSummaryItem.java | 99 | 61 | 43 | 6 | 22 | 0 | 16 | 47 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\CustomPDFViewer.java | 1174 | 817 | 650 | 53 | 128 | 0 | 229 | 1206 | 20 | 159 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Dimension.java | 52 | 32 | 23 | 4 | 12 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\FASTAparser.java | 78 | 62 | 48 | 13 | 8 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\FileMerger.java | 192 | 156 | 128 | 18 | 18 | 0 | 18 | 93 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Filter.java | 52 | 37 | 26 | 8 | 7 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\GlobalUtils.java | 158 | 128 | 101 | 24 | 22 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Heatmap.java | 157 | 106 | 90 | 12 | 13 | 0 | 38 | 83 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Hit.java | 49 | 30 | 21 | 5 | 11 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\HitCollection.java | 65 | 47 | 36 | 12 | 10 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\HitStatistic.java | 88 | 61 | 44 | 10 | 18 | 0 | 9 | 27 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\HitStatisticCollection.java | 80 | 65 | 48 | 21 | 7 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\ImageUtilities.java | 262 | 104 | 77 | 27 | 71 | 0 | 87 | 494 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Interval.java | 38 | 21 | 15 | 2 | 9 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\IntervalUtil.java | 172 | 145 | 114 | 30 | 17 | 0 | 10 | 53 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\LCATaxNode.java | 136 | 112 | 91 | 16 | 16 | 0 | 8 | 24 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\LCATaxNodeCollection.java | 163 | 120 | 96 | 18 | 17 | 0 | 26 | 146 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Matrix2D.java | 567 | 484 | 370 | 100 | 52 | 0 | 31 | 118 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\MatrixEntry.java | 128 | 98 | 69 | 18 | 22 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\MatrixSetupResults.java | 16 | 5 | 4 | 0 | 3 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Preferences.java | 250 | 203 | 155 | 31 | 39 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\QuerySequence.java | 53 | 34 | 24 | 5 | 11 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\QuerySequenceCollection.java | 322 | 281 | 221 | 56 | 23 | 0 | 18 | 62 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\QuerySequenceWrapperCollection.java | 204 | 172 | 138 | 20 | 24 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\SearchTerm.java | 83 | 57 | 42 | 5 | 18 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\SearchTermCollection.java | 221 | 191 | 154 | 26 | 22 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Sequence.java | 136 | 102 | 73 | 16 | 26 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\SequenceCollection.java | 69 | 43 | 33 | 9 | 10 | 0 | 16 | 51 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\TaxNodesWrapper.java | 378 | 305 | 221 | 45 | 39 | 0 | 34 | 115 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\TaxPaths.java | 104 | 86 | 69 | 18 | 8 | 0 | 10 | 39 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Import\BLASTHit.java | 140 | 115 | 94 | 13 | 15 | 0 | 10 | 47 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Import\BLASTOutFileSplitter.java | 152 | 113 | 91 | 18 | 21 | 0 | 18 | 81 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Import\BLASTOutImporter.java | 320 | 271 | 224 | 34 | 30 | 0 | 19 | 87 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Import\BLASTQuery.java | 88 | 70 | 58 | 7 | 10 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Import\BLASTQueryCollection.java | 237 | 206 | 166 | 30 | 21 | 0 | 10 | 40 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Import\BLASTSubhit.java | 255 | 188 | 161 | 18 | 21 | 0 | 46 | 87 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\Classes\Import\TaxNodesImporter.java | 274 | 239 | 174 | 18 | 27 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\BLASTGrabberAboutBox.java | 110 | 80 | 45 | 0 | 19 | 17 | 11 | 69 | 3 | 3 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmBLASTFileSplitter.java | 421 | 347 | 217 | 2 | 49 | 59 | 25 | 157 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmClipboard.java | 527 | 437 | 321 | 32 | 54 | 47 | 36 | 169 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmClipboardAdmin.java | 219 | 171 | 108 | 6 | 26 | 28 | 22 | 117 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmClipboardSequences.java | 172 | 125 | 86 | 2 | 22 | 11 | 25 | 109 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmCube.java | 505 | 426 | 290 | 12 | 57 | 61 | 22 | 150 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmDownloadSequences.java | 304 | 244 | 166 | 6 | 35 | 29 | 25 | 127 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmFileViewer.java | 303 | 203 | 140 | 12 | 32 | 17 | 68 | 223 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmImport.java | 483 | 404 | 265 | 5 | 51 | 58 | 28 | 171 | 10 | 28 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmInferTaxonomy.java | 287 | 230 | 162 | 7 | 35 | 33 | 22 | 121 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmMatrixSetup.java | 1510 | 1319 | 799 | 33 | 153 | 191 | 38 | 318 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmMergeBLASTGrabberFiles.java | 411 | 339 | 217 | 5 | 50 | 55 | 22 | 143 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmPreferences.java | 861 | 739 | 456 | 14 | 100 | 120 | 22 | 209 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmSelectClipboard.java | 127 | 83 | 63 | 3 | 19 | 6 | 25 | 104 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmSequenceDisplay.java | 512 | 435 | 294 | 14 | 55 | 61 | 22 | 150 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmSequenceDisplayList.java | 396 | 334 | 243 | 17 | 40 | 32 | 22 | 121 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmStartupScreen.java | 212 | 158 | 110 | 0 | 23 | 21 | 31 | 135 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmSummary.java | 500 | 410 | 256 | 7 | 66 | 69 | 24 | 160 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmTaxonomy.java | 270 | 218 | 158 | 7 | 30 | 27 | 22 | 116 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmTextAnalysis.java | 587 | 500 | 363 | 27 | 65 | 61 | 22 | 150 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmTextAnalysisPiechart.java | 114 | 64 | 46 | 2 | 23 | 6 | 27 | 112 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmTextAnalysisProgress.java | 179 | 129 | 92 | 3 | 25 | 10 | 25 | 108 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmUpdateTaxonomy.java | 419 | 347 | 228 | 5 | 47 | 42 | 25 | 140 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\frmUserGuide.java | 280 | 222 | 170 | 4 | 33 | 21 | 25 | 119 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\MDIMain.java | 1267 | 1088 | 884 | 62 | 137 | 107 | 42 | 273 | 3 | 3 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Beans\CubeTable.java | 709 | 560 | 446 | 61 | 71 | 0 | 78 | 281 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Beans\PDFPanel.java | 40 | 20 | 16 | 0 | 8 | 0 | 12 | 32 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Beans\PopupMenuClickedEvent.java | 31 | 16 | 12 | 1 | 7 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Beans\SequenceDisplay.java | 241 | 206 | 164 | 28 | 26 | 0 | 9 | 34 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Beans\SequenceDisplayCellRenderer.java | 103 | 82 | 67 | 12 | 13 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Beans\SequenceDisplayData.java | 146 | 118 | 89 | 20 | 20 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Beans\SequenceDisplayGuideTable.java | 113 | 92 | 79 | 7 | 11 | 0 | 10 | 34 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Beans\SequenceDisplayLayer.java | 178 | 153 | 115 | 36 | 17 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Beans\SequenceDisplayLayerItem.java | 178 | 141 | 104 | 29 | 29 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Beans\SequenceDisplayTable.java | 349 | 301 | 236 | 26 | 35 | 0 | 13 | 77 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\BasicCubeTableCellRenderer.java | 99 | 74 | 66 | 8 | 9 | 0 | 16 | 82 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\CubeTableRowSorter.java | 32 | 18 | 14 | 1 | 6 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\CustomFileChooser.java | 73 | 36 | 23 | 0 | 12 | 2 | 25 | 100 | 9 | 27 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\CustomRowSorter.java | 48 | 32 | 25 | 3 | 8 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\CustomStringComparator.java | 108 | 90 | 74 | 11 | 10 | 0 | 8 | 24 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\DefaultTableHeaderCellRenderer.java | 113 | 54 | 41 | 11 | 7 | 0 | 52 | 268 | 3 | 6 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\DoubleIntObject.java | 35 | 21 | 15 | 2 | 6 | 0 | 8 | 24 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\HeatmapCellRenderer.java | 50 | 34 | 27 | 3 | 8 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\IDNameHolder.java | 42 | 25 | 17 | 3 | 9 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\JTableColumnWidthFormatter.java | 32 | 18 | 13 | 2 | 6 | 0 | 8 | 24 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\jTreeCellRenderer.java | 72 | 48 | 31 | 4 | 10 | 0 | 14 | 40 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\NumberVerifier.java | 55 | 40 | 31 | 9 | 7 | 0 | 8 | 25 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\StandardTableCellRenderer.java | 34 | 21 | 15 | 2 | 5 | 0 | 8 | 24 | 4 | 18 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\VerticalLabelUI.java | 191 | 105 | 74 | 15 | 19 | 0 | 67 | 278 | 3 | 6 |
C:\MERG\Apps\BLASTGrabber\src\BLASTGrabber\GUI\Classes\VerticalTableHeaderCellRenderer.java | 127 | 64 | 44 | 10 | 9 | 0 | 54 | 270 | 3 | 6 |