Introduction


JAMBLAST: Java Application Manager for the ncbi BLAST results produced with the NOBLAST.
With the most common BLAST searches protocols:
BLASTN
BLASTP
BLASTX
TBLASTN
TBLASTX
Mega BLAST
PSI-BLAST


JAMBLAST is a graphic cross platform application written in Java.

JAMBLAST allows the user to:

Manage Blast results:
Import and manage blast results produced with the patched (NOBLAST patch) blastall, bastcl3 and blastpgp application (with the output option -m 18 or -m 19) for:
See the NOBLAST (New Options for BLAST) package.
Display alignments (graphic & text) and view the results in a speadsheet form.
Filter using multicriteria parameters.
Sort Multi/Single colunm.
Export in csv format the filtered/sorted blast results
Export alignments of selected hits in fasta format.
Save selected queries sequences of selected queries in fasta format.
Delete Selected blast results set.

For the NOBLAST please see: https://sourceforge.net/projects/noblast/.

Requirement:

Java 2 version 1.5 or later (Sun Java jre 1.5.0 or newer). Older versions of Java are not supported.

MySql version 4.1 or better (installed and running)
MySql server can be running locally or distant (not recommended)


License:

JamBlast is free software, and you are welcome to redistribute and modify it under the terms of the GNU General Public License (either version 3 or any later version). See the file gpl-3.0.txt for details.