JamBlast fields descrption |
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JamBlast fields |
Description |
Blast myslq Fields |
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Graphic view & result ID |
Graphic view of the alignment & blast results ID
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TOTAL_HIT |
Query(Q) ID |
Query ID: order number in the query file
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QUERY |
Hit rank |
Hit ID for a query others Hits can be viewed with the popup menu |
HIT |
Hsp rank |
HSP ID for a Hit: 0 means no other HSP when 1 others HSPs can be viewed with the popup menu
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HSP |
Q Name |
Query Name |
Q_TITLE |
GI number |
GI number or subject ID: order in the subjects file |
GI |
Subject(S) Name |
Subject Name |
S_TITLE |
Q size |
Length of the Query sequence |
L_Q |
S size |
Length of the subject sequence |
L_S |
Alignment(Ali) size |
Size of the alignment |
SIZE_ALI |
% Ali coverage Q |
% of alignment coverage for the Query, gaps excluded |
POURC_Q |
% Ali coverage S |
% of alignment coverage for the Subject, gaps excluded |
POURC_S |
Q Ali start |
Position of the alignment start of the Query |
Q_START |
Q Ali end |
Position of the alignment end of the Query |
Q_END |
S Ali start |
Position of the alignment start of the Subject |
S_START |
S Ali end |
Position of the alignment end of the Subject |
S_END |
Score |
Blast Score (databse field=SCORE) |
SCORE |
BIT score, |
Blast Bit score |
BIT_SCORE |
E Value |
E value |
E_VALUE |
Identity |
Total number of identity |
IDENTITY |
% Identity |
% of identity |
POUR_IDENT |
Positive |
Total number of Positive |
POSITIVE |
% Positive |
% of positive |
POUR_POSITIVE |
Gaps Total |
total number of Gaps |
GAPS |
% Gaps Total |
% of gaps |
POUR_GAPS |
Q Gaps |
Gaps only for the Query |
QGAPS |
S Gaps |
Gaps only for the subject |
SGAPS |
Q Frame |
Query Sense or Frame |
QFRAME |
S Frame |
Subject Sense or Frame |
SFRAME |
Iteration |
Number of iterations of PSI-BLAST (0 for others programs) |
ITERATION |
Comments |
Comment concerning the PSI-BLAST. In case of convergence "CONVERGED" will be written |
COMMENTS |