JamBlast fields descrption




JamBlast fields Description Blast myslq Fields



Graphic view & result ID Graphic view of the alignment & blast results ID TOTAL_HIT
Query(Q) ID Query ID: order number in the query file QUERY
Hit rank Hit ID for a query others Hits can be viewed with the popup menu HIT
Hsp rank HSP ID for a Hit: 0 means no other HSP when 1 others HSPs can be viewed with the popup menu HSP
Q Name Query Name Q_TITLE
GI number GI number or subject ID: order in the subjects file GI
Subject(S) Name Subject Name S_TITLE
Q size Length of the Query sequence L_Q
S size Length of the subject sequence L_S
Alignment(Ali) size Size of the alignment SIZE_ALI
% Ali coverage Q % of alignment coverage for the Query, gaps excluded POURC_Q
% Ali coverage S % of alignment coverage for the Subject, gaps excluded POURC_S
Q Ali start Position of the alignment start of the Query Q_START
Q Ali end Position of the alignment end of the Query Q_END
S Ali start Position of the alignment start of the Subject S_START
S Ali end Position of the alignment end of the Subject S_END
Score Blast Score (databse field=SCORE) SCORE
BIT score, Blast Bit score BIT_SCORE
E Value E value E_VALUE
Identity Total number of identity IDENTITY
% Identity % of identity POUR_IDENT
Positive Total number of Positive POSITIVE
% Positive % of positive POUR_POSITIVE
Gaps Total total number of Gaps GAPS
% Gaps Total % of gaps POUR_GAPS
Q Gaps Gaps only for the Query QGAPS
S Gaps Gaps only for the subject SGAPS
Q Frame Query Sense or Frame QFRAME
S Frame Subject Sense or Frame SFRAME
Iteration Number of iterations of PSI-BLAST (0 for others programs) ITERATION
Comments Comment concerning the PSI-BLAST. In case of convergence "CONVERGED" will be written COMMENTS