1) Menu "Filter & Sort " click on "Main Filter"
Filter settings:
Filters | Types | Documentation |
% min of alignment coverage | 0.0 to 100.0 % | Set the minimum alignment coverage percentage |
% min of Identity | 0.0 to 100.0 % | Set the minimum Identity percentage |
The choice box | The above parameters are applied to the either to query or to the subject separately or to the query and/or the subject | |
Set the E value cut off | real number | You set the E value to the maximum |
# max of HITS/query to keep (0=all) | Integer | You can choose to keep all filtered hits by setting the value to 0 or keep only the number of best hits |
min. len. of the alignment (0=no limit) | Integer | You can set the minimum length of the alignment |
include no match | If the parameter is set it keeps also the queries without any match in the blast database | |
include the HSPs | If the parameter is set it keeps also all HSPs for a given Hit | |
skip Hits when Query. ID equal Subject ID | It's used for example when a query set is "Blasted" against itself or the query definition is included in the blast database | |
Used for example when a query set is “Blasted” against itself or the query definition is included in the blast database | ||
Sort by alignment Descendant | You can choose to sort the hits for a given query taking the largest alignment first | |
Click 'Filter Evaluation' to validate your filters
and click 'Return to main' when you have finish.