Index of /~psgendb/birchhomedir/BIRCHDEV/doc/local/pkg/brassica_rnaseq_scripts/programs/bbmap/current/align2

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[ ]Heap.java 2012-07-10 12:22 3.0K 
[ ]CompressString.java 2012-07-10 12:22 7.2K 
[ ]Pointer.java 2012-07-10 12:22 818  
[ ]Solver.java 2012-12-13 13:36 8.1K 
[ ]IntList.java 2012-12-18 11:08 1.6K 
[ ]Index.java 2012-12-19 19:10 159  
[ ]PackedHeap.java 2012-12-20 19:06 4.0K 
[ ]Quad.java 2012-12-28 13:42 595  
[ ]Quad64Heap.java 2012-12-28 14:29 4.8K 
[ ]Quad64.java 2012-12-28 14:42 719  
[ ]QuadHeap.java 2013-03-06 17:45 4.9K 
[ ]LongList.java 2013-06-06 16:14 2.0K 
[ ]NeedlemanWunsch.java 2013-07-09 13:31 2.6K 
[ ]LongM.java 2013-08-26 12:44 1.3K 
[ ]IndexMaker5.java 2013-09-13 16:58 18K 
[TXT]KeyRing.java 2013-11-01 14:27 19K 
[TXT]MultiStateAligner10t..>2013-12-12 14:24 111K 
[ ]Block.java 2013-12-16 15:47 4.1K 
[ ]PrintTime.java 2013-12-16 18:20 897  
[ ]ReformatBatchOutput...>2013-12-16 19:05 5.5K 
[ ]ReformatBatchOutput2..>2013-12-16 19:05 1.6K 
[ ]BandedAligner.java 2013-12-23 13:52 24K 
[ ]Blacklist.java 2014-01-02 11:52 2.8K 
[ ]GapTools.java 2014-01-02 11:52 5.1K 
[ ]ListNum.java 2014-01-02 11:52 770  
[TXT]MSA.java 2014-01-02 11:52 31K 
[ ]MakeErrorCountHistog..>2014-01-02 11:52 3.0K 
[ ]MultiStateAligner9Pa..>2014-01-02 11:52 56K 
[ ]MultiStateAligner9Pa..>2014-01-02 11:52 56K 
[ ]MultiStateAligner9Pa..>2014-01-02 11:52 81K 
[TXT]MultiStateAligner9fs..>2014-01-02 11:52 81K 
[TXT]MultiStateAligner9ts..>2014-01-02 11:52 78K 
[ ]MultiStateAligner11t..>2014-01-02 11:52 81K 
[TXT]RandomReads.java 2014-01-02 11:52 25K 
[TXT]ReadErrorComparator...>2014-01-02 11:52 1.0K 
[ ]ReadLengthComparator..>2014-01-02 11:52 1.1K 
[TXT]SplitSamFile.java 2014-01-02 11:52 1.4K 
[ ]MakeErrorQualityHist..>2014-01-02 14:14 3.3K 
[ ]MakeInsertHistogram...>2014-01-02 14:14 3.7K 
[ ]MakeQualityHistogram..>2014-01-02 14:14 3.1K 
[ ]VerifyPairedReads.java 2014-01-02 14:14 2.8K 
[ ]RefToIndex.java 2014-01-02 14:36 6.0K 
[ ]ChromLoadThread.java 2014-01-02 14:57 2.3K 
[ ]ReadStats.java 2014-01-03 19:23 9.7K 
[ ]AbstractIndex.java 2014-01-24 19:27 7.4K 
[ ]Evaluate.java 2014-02-12 12:55 1.6K 
[ ]ReadToSam.java 2014-02-12 12:55 4.6K 
[ ]SortReadsByMapping.java2014-02-12 12:55 64K 
[ ]SplitMappedReads.java 2014-02-12 12:55 9.3K 
[ ]QualityTools.java 2014-02-12 13:18 12K 
[TXT]BBMapThread.java 2014-02-21 11:42 60K 
[TXT]BBMapThread5.java 2014-02-21 11:42 56K 
[TXT]BBMapThreadAcc.java 2014-02-21 11:42 62K 
[TXT]BBMapThreadPacBio.java 2014-02-21 11:42 56K 
[TXT]BBMapThreadPacBioSki..>2014-02-21 11:42 62K 
[ ]BBMap.java 2014-02-21 11:43 18K 
[ ]BBMap5.java 2014-02-21 11:43 17K 
[ ]BBMapAcc.java 2014-02-21 11:43 17K 
[ ]BBMapPacBio.java 2014-02-21 15:41 17K 
[ ]BBMapPacBioSkimmer.java2014-02-21 15:41 18K 
[ ]AbstractMapThread.java 2014-02-21 15:42 101K 
[ ]IndexMaker4.java 2014-02-25 16:25 19K 
[ ]MultiStateAligner9Pa..>2014-02-27 13:18 79K 
[ ]TranslateColorspaceR..>2014-02-27 14:06 103K 
[ ]TrimRead.java 2014-03-06 12:15 16K 
[ ]BBIndex.java 2014-03-10 12:50 117K 
[ ]BBIndex5.java 2014-03-10 12:50 91K 
[ ]BBIndexAcc.java 2014-03-10 12:50 98K 
[ ]BBIndexPacBio.java 2014-03-10 12:50 89K 
[ ]BBIndexPacBioSkimmer..>2014-03-10 12:50 77K 
[ ]AbstractMapper.java 2014-03-14 12:31 108K 
[ ]BBSplitter.java 2014-03-14 12:31 36K 
[ ]CompareSamFiles.java 2014-03-14 12:31 11K 
[ ]GradeSamFile.java 2014-03-14 12:31 12K 
[ ]MakeRocCurve.java 2014-03-14 12:31 10K 
[ ]RandomReads3.java 2014-03-14 12:31 42K 
[ ]SortReadsByID.java 2014-03-14 12:31 8.5K 
[ ]SortReadsTopological..>2014-03-14 12:31 20K 
[TXT]Tools.java 2014-03-14 12:33 46K 
[ ]Shared.java 2014-03-14 12:35 2.3K 
[ ]AbstractIndex.class 2014-03-14 13:34 5.3K 
[ ]AbstractMapThread.class2014-03-14 13:34 56K 
[ ]AbstractMapper.class 2014-03-14 13:34 102K 
[ ]BBIndex.class 2014-03-14 13:34 61K 
[ ]BBIndex5.class 2014-03-14 13:34 49K 
[ ]BBIndexAcc.class 2014-03-14 13:34 52K 
[ ]BBIndexPacBio.class 2014-03-14 13:34 50K 
[ ]BBIndexPacBioSkimmer..>2014-03-14 13:34 44K 
[ ]BBMap.class 2014-03-14 13:34 17K 
[ ]BBMap5.class 2014-03-14 13:34 17K 
[ ]BBMapAcc.class 2014-03-14 13:34 17K 
[ ]BBMapPacBio.class 2014-03-14 13:34 17K 
[ ]BBMapPacBioSkimmer.c..>2014-03-14 13:34 16K 
[ ]BBMapThread$1.class 2014-03-14 13:34 394  
[ ]BBMapThread.class 2014-03-14 13:34 38K 
[ ]BBMapThread5$1.class 2014-03-14 13:34 398  
[ ]BBMapThread5.class 2014-03-14 13:34 36K 
[ ]BBMapThreadAcc$1.class 2014-03-14 13:34 406  
[ ]BBMapThreadAcc.class 2014-03-14 13:34 38K 
[ ]BBMapThreadPacBio$1...>2014-03-14 13:34 418  
[ ]BBMapThreadPacBio.class2014-03-14 13:34 37K 
[ ]BBMapThreadPacBioSki..>2014-03-14 13:34 39K 
[ ]BBSplitter$1.class 2014-03-14 13:34 421  
[ ]BBSplitter$SetCount...>2014-03-14 13:34 1.7K 
[ ]BBSplitter.class 2014-03-14 13:34 34K 
[ ]BandedAligner.class 2014-03-14 13:34 17K 
[ ]Blacklist.class 2014-03-14 13:34 3.7K 
[ ]Block.class 2014-03-14 13:34 4.4K 
[ ]ChromLoadThread.class 2014-03-14 13:34 3.2K 
[ ]CompareSamFiles.class 2014-03-14 13:34 8.6K 
[ ]CompressString.class 2014-03-14 13:34 4.6K 
[ ]Evaluate.class 2014-03-14 13:34 2.5K 
[ ]GapTools$Range.class 2014-03-14 13:34 1.7K 
[ ]GapTools.class 2014-03-14 13:34 5.4K 
[ ]GradeSamFile.class 2014-03-14 13:34 12K 
[ ]Heap.class 2014-03-14 13:34 3.4K 
[ ]Index.class 2014-03-14 13:34 254  
[ ]IndexMaker4$BlockMak..>2014-03-14 13:34 7.2K 
[ ]IndexMaker4$BlockMak..>2014-03-14 13:34 5.4K 
[ ]IndexMaker4.class 2014-03-14 13:34 5.8K 
[ ]IndexMaker5$BlockMak..>2014-03-14 13:34 7.1K 
[ ]IndexMaker5$BlockMak..>2014-03-14 13:34 5.3K 
[ ]IndexMaker5.class 2014-03-14 13:34 5.6K 
[ ]IntList.class 2014-03-14 13:34 2.2K 
[ ]KeyRing.class 2014-03-14 13:34 11K 
[ ]ListNum.class 2014-03-14 13:34 1.5K 
[ ]LongList.class 2014-03-14 13:34 3.2K 
[ ]LongM.class 2014-03-14 13:34 2.2K 
[ ]MSA.class 2014-03-14 13:34 18K 
[ ]MakeErrorCountHistog..>2014-03-14 13:34 4.6K 
[ ]MakeErrorQualityHist..>2014-03-14 13:34 4.9K 
[ ]MakeInsertHistogram...>2014-03-14 13:34 5.1K 
[ ]MakeQualityHistogram..>2014-03-14 13:34 4.5K 
[ ]MakeRocCurve.class 2014-03-14 13:34 9.0K 
[ ]MultiStateAligner9Pa..>2014-03-14 13:34 45K 
[ ]MultiStateAligner9Pa..>2014-03-14 13:34 32K 
[ ]MultiStateAligner9Pa..>2014-03-14 13:34 32K 
[ ]MultiStateAligner9Pa..>2014-03-14 13:34 43K 
[ ]MultiStateAligner9fs..>2014-03-14 13:34 41K 
[ ]MultiStateAligner9ts..>2014-03-14 13:34 44K 
[ ]MultiStateAligner10t..>2014-03-14 13:34 59K 
[ ]MultiStateAligner11t..>2014-03-14 13:34 44K 
[ ]NeedlemanWunsch.class 2014-03-14 13:34 3.1K 
[ ]PackedHeap.class 2014-03-14 13:34 3.3K 
[ ]Pointer.class 2014-03-14 13:34 1.5K 
[ ]PrintTime.class 2014-03-14 13:34 1.7K 
[ ]Quad.class 2014-03-14 13:34 1.4K 
[ ]Quad64.class 2014-03-14 13:34 1.6K 
[ ]Quad64Heap.class 2014-03-14 13:34 3.4K 
[ ]QuadHeap.class 2014-03-14 13:34 3.8K 
[ ]QualityTools.class 2014-03-14 13:34 7.9K 
[ ]RandomReads.class 2014-03-14 13:34 19K 
[ ]RandomReads3.class 2014-03-14 13:34 35K 
[ ]ReadErrorComparator...>2014-03-14 13:34 1.6K 
[ ]ReadLengthComparator..>2014-03-14 13:34 1.4K 
[ ]ReadStats.class 2014-03-14 13:34 9.7K 
[ ]ReadToSam.class 2014-03-14 13:34 5.5K 
[ ]RefToIndex.class 2014-03-14 13:34 7.2K 
[ ]ReformatBatchOutput...>2014-03-14 13:34 5.5K 
[ ]ReformatBatchOutput2..>2014-03-14 13:34 2.0K 
[ ]Shared.class 2014-03-14 13:34 2.8K 
[ ]Solver.class 2014-03-14 13:34 6.2K 
[ ]SortReadsByID$Block...>2014-03-14 13:34 2.0K 
[ ]SortReadsByID$ReadCo..>2014-03-14 13:34 1.0K 
[ ]SortReadsByID.class 2014-03-14 13:34 8.9K 
[ ]SortReadsByMapping$B..>2014-03-14 13:34 3.9K 
[ ]SortReadsByMapping$R..>2014-03-14 13:34 4.3K 
[ ]SortReadsByMapping$R..>2014-03-14 13:34 3.4K 
[ ]SortReadsByMapping.c..>2014-03-14 13:34 39K 
[ ]SortReadsTopological..>2014-03-14 13:34 3.9K 
[ ]SortReadsTopological..>2014-03-14 13:34 2.2K 
[ ]SortReadsTopological..>2014-03-14 13:34 16K 
[ ]SplitMappedReads.class 2014-03-14 13:34 9.3K 
[ ]SplitSamFile.class 2014-03-14 13:34 2.4K 
[ ]Tools.class 2014-03-14 13:34 35K 
[ ]TranslateColorspaceR..>2014-03-14 13:34 58K 
[ ]TrimRead.class 2014-03-14 13:34 12K 
[ ]VerifyPairedReads.class2014-03-14 13:34 4.1K