H DOSZ010102 D Normalised version of SM_SAUSAGE (Dosztanyi-Torda, 2001) R PMID:11524370 A Dosztanyi, Z. and Torda, A.E. T Amino acid similarity matrices based on force fields J Bioinformatics. 17, 686-699 (2001) * #SM_SAUS_NORM * #Normalised version of SM_SAUSAGE * #For each matrix element of SM_SAUSAGE, the average over its column and row were subtracted. * #Supplementary material * #http://www.rsc.anu.edu.au/~zsuzsa/suppl/matrices/SM_SAUS_NORM * #Zsuzsanna Doszt?yi and Andrew E. Torda * #Amino acid similarity matrices based on force fields * #The amino acids are ordered according to the first principal component of the SM_SAUSAGE matrix. M rows = ARNDCQEGHILKMFPSTWYV, cols = ARNDCQEGHILKMFPSTWYV 0.56 -5.10 -7.00 -7.73 0.83 -5.75 -6.26 -4.00 -5.12 -1.42 -0.71 -6.17 -1.44 -1.90 -7.45 -5.11 -6.13 -1.22 -2.38 -2.26 -4.35 0.78 -0.16 -1.92 -9.95 -0.76 -1.47 -2.26 -2.33 -8.02 -7.13 0.93 -5.59 -6.89 -2.89 -1.52 -2.29 -6.20 -6.44 -7.30 -5.77 -1.19 2.69 3.20 -9.21 -0.47 0.31 -0.51 -2.20 -10.75 -9.48 -0.26 -8.00 -7.97 -1.81 0.24 -1.08 -7.43 -6.70 -9.36 -5.30 -1.93 3.82 8.58 -10.18 0.63 3.96 0.39 -2.59 -13.72 -11.35 -0.39 -9.45 -9.67 -0.94 1.79 -0.32 -8.82 -7.82 -12.42 -1.72 -8.93 -11.04 -12.59 8.91 -9.31 -10.67 -8.60 -5.98 4.64 3.68 -10.42 2.17 2.61 -10.05 -8.27 -7.21 1.05 1.86 4.11 -4.22 -0.66 0.14 0.51 -9.50 -0.05 0.50 -2.03 -2.34 -8.94 -7.32 0.13 -6.00 -7.28 -2.89 -1.96 -2.68 -6.16 -6.52 -8.49 -4.66 -0.60 1.40 4.09 -11.62 0.74 3.35 -0.89 -2.27 -10.89 -9.31 0.49 -7.69 -8.51 -1.29 -1.00 -1.81 -7.23 -7.74 -10.31 -2.72 -3.58 -1.07 -0.67 -2.34 -2.60 -1.59 7.98 -3.42 -11.80 -10.82 -2.10 -7.33 -7.17 -0.52 -0.24 -3.37 -5.61 -6.74 -10.01 -4.62 -2.70 -1.65 -1.56 -3.85 -2.73 -2.77 -2.09 -2.55 -6.88 -6.34 -2.36 -5.32 -5.02 -2.94 -2.48 -3.13 -5.59 -4.71 -6.44 -3.54 -7.10 -11.57 -13.36 0.31 -8.69 -10.38 -12.05 -6.06 9.92 6.53 -9.26 2.19 3.12 -8.48 -11.11 -6.99 1.12 1.50 8.16 -2.74 -6.81 -9.98 -11.26 0.73 -7.44 -8.85 -10.47 -5.34 6.58 5.26 -8.48 1.62 1.91 -8.38 -9.58 -7.08 0.30 0.07 4.19 -4.52 1.87 1.66 0.73 -12.46 0.93 0.77 -0.31 -1.81 -10.93 -9.60 3.01 -7.07 -8.79 -1.43 -0.17 -1.43 -8.02 -8.13 -10.05 -3.19 -5.33 -7.25 -8.13 -1.06 -5.56 -6.49 -7.84 -4.34 1.59 1.24 -5.99 -0.02 -0.91 -6.45 -7.27 -6.08 -1.10 -1.77 0.20 -3.42 -6.69 -8.26 -8.93 1.34 -7.06 -8.01 -7.42 -4.96 2.74 1.57 -7.53 -0.35 0.74 -6.23 -7.68 -6.23 -0.50 -0.36 1.52 -5.95 -3.94 -2.26 -0.52 -7.12 -2.87 -1.51 -0.20 -2.55 -7.90 -8.52 -1.66 -7.10 -6.65 7.75 -1.58 -2.20 -5.96 -7.30 -7.69 -3.67 -2.18 0.63 1.90 -5.80 -1.63 -0.97 0.58 -3.10 -11.75 -9.84 -1.38 -7.62 -8.02 -1.44 3.35 -0.07 -7.36 -6.95 -10.43 -4.77 -2.16 -0.75 -0.62 -7.27 -2.26 -2.25 -2.58 -3.43 -7.48 -7.34 -1.98 -6.61 -6.42 -2.08 0.71 -0.11 -6.41 -5.58 -6.35 -3.91 -6.07 -6.74 -6.70 0.60 -5.95 -6.26 -5.99 -4.57 -0.27 -0.92 -6.32 -2.01 -1.37 -4.55 -6.28 -5.42 -0.78 -1.14 -1.09 -3.88 -5.94 -6.73 -6.96 0.33 -5.99 -6.32 -6.07 -4.56 0.05 -0.99 -6.20 -1.90 -0.88 -5.16 -6.67 -5.43 -1.14 -0.77 -0.54 -3.35 -7.47 -11.62 -13.79 1.58 -8.92 -10.84 -11.38 -6.24 9.49 5.63 -9.80 1.76 3.32 -8.51 -10.91 -6.70 1.31 1.87 8.82 //