H GONG920101 D The mutation matrix for initially aligning (Gonnet et al., 1992) R LIT:1813110 PMID:1604319 A Gonnet, G.H., Cohen, M.A. and Benner, S.A. T Exhaustive matching of the entire protein sequence database J Science 256, 1443-1445 (1992) M rows = ARNDCQEGHILKMFPSTWYV, cols = ARNDCQEGHILKMFPSTWYV 2.4 -0.6 4.7 -0.3 0.3 3.8 -0.3 -0.3 2.2 4.7 0.5 -2.2 -1.8 -3.2 11.5 -0.2 1.5 0.7 0.9 -2.4 2.7 0.0 0.4 0.9 2.7 -3.0 1.7 3.6 0.5 -1.0 0.4 0.1 -2.0 -1.0 -0.8 6.6 -0.8 0.6 1.2 0.4 -1.3 1.2 0.4 -1.4 6.0 -0.8 -2.4 -2.8 -3.8 -1.1 -1.9 -2.7 -4.5 -2.2 4.0 -1.2 -2.2 -3.0 -4.0 -1.5 -1.6 -2.8 -4.4 -1.9 2.8 4.0 -0.4 2.7 0.8 0.5 -2.8 1.5 1.2 -1.1 0.6 -2.1 -2.1 3.2 -0.7 -1.7 -2.2 -3.0 -0.9 -1.0 -2.0 -3.5 -1.3 2.5 2.8 -1.4 4.3 -2.3 -3.2 -3.1 -4.5 -0.8 -2.6 -3.9 -5.2 -0.1 1.0 2.0 -3.3 1.6 7.0 0.3 -0.9 -0.9 -0.7 -3.1 -0.2 -0.5 -1.6 -1.1 -2.6 -2.3 -0.6 -2.4 -3.8 7.6 1.1 -0.2 0.9 0.5 0.1 0.2 0.2 0.4 -0.2 -1.8 -2.1 0.1 -1.4 -2.8 0.4 2.2 0.6 -0.2 0.5 0.0 -0.5 0.0 -0.1 -1.1 -0.3 -0.6 -1.3 0.1 -0.6 -2.2 0.1 1.5 2.5 -3.6 -1.6 -3.6 -5.2 -1.0 -2.7 -4.3 -4.0 -0.8 -1.8 -0.7 -3.5 -1.0 3.6 -5.0 -3.3 -3.5 14.2 -2.2 -1.8 -1.4 -2.8 -0.5 -1.7 -2.7 -4.0 2.2 -0.7 0.0 -2.1 -0.2 5.1 -3.1 -1.9 -1.9 4.1 7.8 0.1 -2.0 -2.2 -2.9 0.0 -1.5 -1.9 -3.3 -2.0 3.1 1.8 -1.7 1.6 0.1 -1.8 -1.0 0.0 -2.6 -1.1 3.4 //