H KANM000101
D Substitution matrix (OPTIMA) derived by maximizing discrimination between
homologs and non-homologs (Kann et al., 2000)
R PMID:11056037
A Kann, M., Qian, B. and Goldstein, R.A.
T Optimization of a new score function for the detection of remote homologs
J Proteins: Structure, Function, and Genetics 41, 498-503 (2000)
M rows = ARNDCQEGHILKMFPSTWYV, cols = ARNDCQEGHILKMFPSTWYV
36
-9      56
-19       4      59
-20     -18      18      65
6     -29     -30     -30      99
-3      12       2       2     -30      46
-10       3       3      20     -39      19      40
4     -18       7     -10     -29     -20     -23      67
-19       3      12      -7     -29       3       2     -18      86
-5     -28     -32     -34      -6     -30     -33     -41     -28      35
-7     -20     -32     -43      -6     -23     -31     -42     -27      28      32
-10      31       1      -4     -29      15      14     -18      -7     -31     -21      37
-9     -10     -19     -30      -8       1     -21     -30     -19      12      24     -12      51
-19     -30     -29     -33     -18     -29     -32     -32      -8       8      17     -29       2      57
-5     -18     -17      -7     -30     -11      -7     -18     -18     -30     -33     -10     -21     -39      74
12     -11      10       4     -10       0      -1       2      -9     -20     -22       3     -10     -19      -8      36
0      -8       0     -10      -7      -7      -6     -17     -20      -8     -13      -8      -7     -18     -11      18      48
-29     -29     -39     -40     -18     -19     -29     -19     -18     -28     -15     -30      -8      14     -38     -29     -19     110
-19     -15     -19     -20     -18      -9     -21     -29      20      -8      -2     -17      -9      37     -28     -19     -17      22      69
6     -32     -31     -31      -6     -19     -28     -30     -29      35      18     -23      10       0     -18     -22       6     -28      -9      38
//