H MUET020101
D Substitution matrix (VTML160) obtained by maximum likelihood estimation
(Mueller et al., 2002)
R PMID:11752185
A Mueller, T., Spang, R. and Vingron, M.
T Estimating amino acid substitution models: A comparison of Dayhoff's
estimator, the resolvent approach and a maximum likelihood method
J Molecular Biology and Evolution 19, 8-13 (2002)
M rows = ARNDCQEGHILKMFPSTWYV, cols = ARNDCQEGHILKMFPSTWYV
5
-2       7
-1       0       7
-1      -3       3       7
1      -3      -3      -5      13
-1       2       0       1      -4       6
-1      -1       0       3      -5       2       6
0      -3       0      -1      -2      -3      -2       8
-2       1       1       0      -2       2      -1      -3       9
-1      -4      -4      -6      -1      -4      -5      -7      -4       6
-2      -3      -4      -6      -4      -2      -4      -6      -3       3       6
-1       4       0       0      -4       2       1      -2       0      -4      -3       5
-1      -2      -3      -5      -1      -1      -3      -5      -3       2       4      -2       8
-3      -5      -5      -7      -4      -4      -6      -6       0       0       2      -5       1       9
0      -2      -2      -1      -3      -1      -1      -3      -2      -4      -3      -1      -4      -5       9
1      -1       1       0       1       0       0       0      -1      -3      -3      -1      -3      -3       0       4
1      -1       0      -1       0      -1      -1      -2      -1      -1      -2      -1      -1      -3      -1       2       5
-5      -4      -5      -7      -7      -6      -7      -5      -1      -2      -1      -5      -4       3      -5      -4      -6      16
-3      -3      -2      -5      -1      -4      -3      -5       3      -2      -1      -3      -2       6      -6      -2      -3       4      10
0      -4      -4      -4       1      -3      -3      -5      -3       4       2      -3       1      -1      -3      -2       0      -5      -3       5
//