H OGAK980101
D Substitution matrix derived from structural alignments by maximizing entropy
(Ogata et al., 1998)
R PMID:10522237
A Ogata, K., Ohya, M. and Umeyama, H.
T Amino acid similarity matrix for homology modeling derived from structural
alignment and optimized by the Monte Carlo method
J Journal of Molecular Graphics and Modelling 16, 178-254 (1998)
M rows = ARNDCQEGHILKMFPSTWYV, cols = ARNDCQEGHILKMFPSTWYV
-4.8
-7.0    -6.2
-7.1    -7.3    -4.8
-6.9    -7.3    -6.3    -5.0
-7.7    -8.3    -8.6    -8.3    -3.2
-7.0    -7.5    -7.1    -7.3    -8.3    -6.5
-6.7    -7.5    -6.5    -6.4   -10.2    -6.8    -5.4
-5.8    -7.5    -6.8    -6.3    -7.5    -7.6    -7.4    -4.2
-7.7    -8.1    -6.8    -8.1    -9.3    -7.7    -7.8    -7.7    -6.1
-7.1    -7.7    -7.6    -8.3    -9.0    -7.9    -8.3    -8.0    -8.2    -5.5
-6.7    -7.9    -7.7    -7.1    -7.7    -7.4    -7.4    -8.0    -8.1    -5.5    -4.0
-6.7    -6.6    -6.8    -6.9    -8.5    -6.7    -6.7    -6.8    -7.6    -8.1    -7.2    -5.5
-8.0    -7.8    -7.4    -8.2    -8.7    -8.5    -8.1    -8.2    -9.7    -7.4    -7.0    -8.2    -6.7
-7.9    -8.1    -8.2    -9.5    -8.9    -8.6    -8.2    -8.1    -8.2    -7.2    -6.6    -8.8    -8.5    -5.7
-6.8    -7.9    -8.0    -7.3    -8.3    -8.1    -7.8    -7.2    -7.5    -7.2    -6.6    -7.5    -8.8    -8.8    -5.7
-5.6    -6.9    -6.5    -5.7    -8.2    -7.0    -6.6    -6.3    -7.0    -7.2    -6.4    -6.6    -7.5    -8.3    -6.8    -4.6
-6.2    -6.8    -6.4    -6.5    -7.5    -7.0    -6.8    -6.7    -8.0    -7.1    -6.2    -6.3    -7.3    -7.7    -6.7    -5.5    -5.0
-9.0    -9.4    -8.6    -9.8   -12.0    -8.3    -7.9    -7.2    -9.7    -7.7    -6.8    -9.5    -7.2    -6.9   -10.4    -7.6    -7.6    -5.0
-7.5    -8.4    -7.0    -7.2   -10.6    -7.3    -7.5    -7.5    -6.8    -7.4    -6.6    -7.3    -7.9    -6.0    -8.1    -7.3    -6.8    -6.5    -4.7
-5.9    -7.4    -7.2    -7.1    -8.1    -7.5    -7.3    -7.3    -7.5    -5.7    -5.8    -6.7    -7.2    -7.1    -7.5    -6.8    -6.2    -7.8    -7.2    -4.8
//