#!/bin/ksh
#
# Description:
#   Test Blixem in protein mode. Features include protein matches, transcripts
#   variations, polyA sites and signals
#
# Results:
#   Blixem's graphical display should start up showing the alignments and transripts.
#   Variations and polyA features can be displayed from the Settings dialog.
#

RC=0

test_name=`basename $0`
test_dir=`dirname $0`
data_dir=$test_dir/../../../data

blixem -t P -s 337622 -m 210623 -z 335873:338382 -n --dataset=human $data_dir/chr4_ref_seq.fasta $data_dir/chr4_protein_align.gff

# If there was an error, set RC
if [ $? -ne 0 ] 
then
  RC=1
fi

exit $RC