/* config.h.  Generated from config.h.in by configure.  */
/* config.h.in.  Generated from configure.ac by autoheader.  */

/* Define if building universal (internal helper macro) */
/* #undef AC_APPLE_UNIVERSAL_BUILD */

/* Define to disable declaration of std::tr1::tuple by boost */
#define BOOST_HAS_TR1_TUPLE 1

/* Width of bits of the FM-index in bits */
#define FMBITS 64

/* Define to 1 if you have the <boost/functional/hash.hpp> header file. */
#define HAVE_BOOST_FUNCTIONAL_HASH_HPP 1

/* Define to 1 if you have the <boost/property_map/property_map.hpp> header
   file. */
#define HAVE_BOOST_PROPERTY_MAP_PROPERTY_MAP_HPP 1

/* Define to 1 if you have the <boost/unordered_set.hpp> header file. */
#define HAVE_BOOST_UNORDERED_SET_HPP 1

/* Define to 1 if you have the <dlfcn.h> header file. */
#define HAVE_DLFCN_H 1

/* Define to 1 if you don't have `vprintf' but do have `_doprnt.' */
/* #undef HAVE_DOPRNT */

/* Define to 1 if you have the `dup2' function. */
#define HAVE_DUP2 1

/* Define to 1 if you have the <fcntl.h> header file. */
#define HAVE_FCNTL_H 1

/* Define to 1 if you have the <float.h> header file. */
#define HAVE_FLOAT_H 1

/* Define to 1 if you have the `fork' function. */
#define HAVE_FORK 1

/* Define to 1 if you have the <functional> header file. */
#define HAVE_FUNCTIONAL 1

/* Define to 1 if you have the `gethostname' function. */
#define HAVE_GETHOSTNAME 1

/* Define to 1 if you have the `getopt_long' function. */
#define HAVE_GETOPT_LONG 1

/* Define to 1 if you have the `getpagesize' function. */
#define HAVE_GETPAGESIZE 1

/* Define to 1 if you have the <google/sparse_hash_map> header file. */
#define HAVE_GOOGLE_SPARSE_HASH_MAP 1

/* Define to 1 if you have the <inttypes.h> header file. */
#define HAVE_INTTYPES_H 1

/* Define to 1 if you have the `dl' library (-ldl). */
#define HAVE_LIBDL 1

/* Define to 1 if you have the `lam' library (-llam). */
/* #undef HAVE_LIBLAM */

/* Define to 1 if you have the `lammpi++' library (-llammpi++). */
/* #undef HAVE_LIBLAMMPI__ */

/* Define to 1 if you have the `m' library (-lm). */
#define HAVE_LIBM 1

/* Define to 1 if you have the `mpi' library (-lmpi). */
/* #undef HAVE_LIBMPI */

/* Define to 1 if you have the `mpich' library (-lmpich). */
/* #undef HAVE_LIBMPICH */

/* Define to 1 if you have the `mpl' library (-lmpl). */
/* #undef HAVE_LIBMPL */

/* Define to 1 if you have the `pthread' library (-lpthread). */
/* #undef HAVE_LIBPTHREAD */

/* Define to 1 if you have the `sqlite3' library (-lsqlite3). */
#define HAVE_LIBSQLITE3 1

/* Define to 1 if you have the <limits.h> header file. */
#define HAVE_LIMITS_H 1

/* Define to 1 if your system has a GNU libc compatible `malloc' function, and
   to 0 otherwise. */
#define HAVE_MALLOC 1

/* Define to 1 if you have the <memory.h> header file. */
#define HAVE_MEMORY_H 1

/* Define to 1 if you have the `memset' function. */
#define HAVE_MEMSET 1

/* Define to 1 if you have the <mpi.h> header file. */
/* #undef HAVE_MPI_H */

/* Define to 0 if you do not have popcnt. */
#define HAVE_POPCNT 1

/* Define to 1 if you have the `pow' function. */
#define HAVE_POW 1

/* Have PTHREAD_PRIO_INHERIT. */
/* #undef HAVE_PTHREAD_PRIO_INHERIT */

/* Define to 1 if the system has the type `ptrdiff_t'. */
#define HAVE_PTRDIFF_T 1

/* Define to 1 if your system has a GNU libc compatible `realloc' function,
   and to 0 otherwise. */
#define HAVE_REALLOC 1

/* Define to 1 if you have the <sqlite3.h> header file. */
#define HAVE_SQLITE3_H 1

/* Define to 1 if you have the `sqrt' function. */
#define HAVE_SQRT 1

/* Define to 1 if stdbool.h conforms to C99. */
#define HAVE_STDBOOL_H 1

/* Define to 1 if you have the <stddef.h> header file. */
#define HAVE_STDDEF_H 1

/* Define to 1 if you have the <stdint.h> header file. */
#define HAVE_STDINT_H 1

/* Define to 1 if you have the <stdlib.h> header file. */
#define HAVE_STDLIB_H 1

/* Define if the system provides std::hash */
/* #undef HAVE_STD_HASH */

/* Define if the system provides std::tr1::hash */
#define HAVE_STD_TR1_HASH 1

/* Define if the system provides std::tr1::tuple */
#define HAVE_STD_TR1_TUPLE 1

/* Define to 1 if you have the `strdup' function. */
#define HAVE_STRDUP 1

/* Define to 1 if you have the `strerror' function. */
#define HAVE_STRERROR 1

/* Define to 1 if you have the <strings.h> header file. */
#define HAVE_STRINGS_H 1

/* Define to 1 if you have the <string.h> header file. */
#define HAVE_STRING_H 1

/* Define to 1 if you have the `strtoul' function. */
#define HAVE_STRTOUL 1

/* Define to 1 if you have the <sys/param.h> header file. */
#define HAVE_SYS_PARAM_H 1

/* Define to 1 if you have the <sys/stat.h> header file. */
#define HAVE_SYS_STAT_H 1

/* Define to 1 if you have the <sys/types.h> header file. */
#define HAVE_SYS_TYPES_H 1

/* Define to 1 if you have the <tr1/functional> header file. */
#define HAVE_TR1_FUNCTIONAL 1

/* Define to 1 if you have the <tr1/unordered_map> header file. */
#define HAVE_TR1_UNORDERED_MAP 1

/* Define to 1 if you have the <tr1/unordered_set> header file. */
#define HAVE_TR1_UNORDERED_SET 1

/* Define to 1 if you have the <unistd.h> header file. */
#define HAVE_UNISTD_H 1

/* Define to 1 if you have the <unordered_map> header file. */
/* #undef HAVE_UNORDERED_MAP */

/* Define to 1 if you have the <unordered_set> header file. */
/* #undef HAVE_UNORDERED_SET */

/* Define to 1 if you have the `vfork' function. */
#define HAVE_VFORK 1

/* Define to 1 if you have the <vfork.h> header file. */
/* #undef HAVE_VFORK_H */

/* Define to 1 if you have the `vprintf' function. */
#define HAVE_VPRINTF 1

/* Define to 1 if `fork' works. */
#define HAVE_WORKING_FORK 1

/* Define to 1 if `vfork' works. */
#define HAVE_WORKING_VFORK 1

/* Define to 1 if the system has the type `_Bool'. */
#define HAVE__BOOL 1

/* Define if the system does not provide HOST_NAME_MAX */
/* #undef HOST_NAME_MAX */

/* maximum Bloom filter hash functions */
#define MAX_HASHES 32

/* maximum k-mer length */
#define MAX_KMER 128

/* Define to disable MPICH C++ bindings */
#define MPICH_SKIP_MPICXX 1

/* Define to disable OpenMPI C++ bindings */
#define OMPI_SKIP_MPICXX 1

/* Name of package */
#define PACKAGE "abyss"

/* Define to the address where bug reports for this package should be sent. */
#define PACKAGE_BUGREPORT "abyss-users@bcgsc.ca"

/* Define to the full name of this package. */
#define PACKAGE_NAME "ABySS"

/* Define to the full name and version of this package. */
#define PACKAGE_STRING "ABySS 2.1.5"

/* Define to the one symbol short name of this package. */
#define PACKAGE_TARNAME "abyss"

/* Define to the version of this package. */
#define PACKAGE_VERSION "2.1.5"

/* Define to necessary symbol if this constant uses a non-standard name on
   your system. */
/* #undef PTHREAD_CREATE_JOINABLE */

/* Define to 1 if you have the ANSI C header files. */
#define STDC_HEADERS 1

/* Version number of package */
#define VERSION "2.1.5"

/* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most
   significant byte first (like Motorola and SPARC, unlike Intel). */
#if defined AC_APPLE_UNIVERSAL_BUILD
# if defined __BIG_ENDIAN__
#  define WORDS_BIGENDIAN 1
# endif
#else
# ifndef WORDS_BIGENDIAN
/* #  undef WORDS_BIGENDIAN */
# endif
#endif

/* Define to 1 if you have sqlite lib/header */
#define _SQL 1

/* Define for Solaris 2.5.1 so the uint32_t typedef from <sys/synch.h>,
   <pthread.h>, or <semaphore.h> is not used. If the typedef were allowed, the
   #define below would cause a syntax error. */
/* #undef _UINT32_T */

/* Define for Solaris 2.5.1 so the uint64_t typedef from <sys/synch.h>,
   <pthread.h>, or <semaphore.h> is not used. If the typedef were allowed, the
   #define below would cause a syntax error. */
/* #undef _UINT64_T */

/* Define for Solaris 2.5.1 so the uint8_t typedef from <sys/synch.h>,
   <pthread.h>, or <semaphore.h> is not used. If the typedef were allowed, the
   #define below would cause a syntax error. */
/* #undef _UINT8_T */

/* Define if the system does not provide ceilf */
/* #undef ceilf */

/* Define to empty if `const' does not conform to ANSI C. */
/* #undef const */

/* Define to `__inline__' or `__inline' if that's what the C compiler
   calls it, or to nothing if 'inline' is not supported under any name.  */
#ifndef __cplusplus
/* #undef inline */
#endif

/* Define to the type of a signed integer type of width exactly 64 bits if
   such a type exists and the standard includes do not define it. */
/* #undef int64_t */

/* Define to rpl_malloc if the replacement function should be used. */
/* #undef malloc */

/* Define to `int' if <sys/types.h> does not define. */
/* #undef mode_t */

/* Define to `int' if <sys/types.h> does not define. */
/* #undef pid_t */

/* Define to rpl_realloc if the replacement function should be used. */
/* #undef realloc */

/* Define to `unsigned int' if <sys/types.h> does not define. */
/* #undef size_t */

/* Define to `int' if <sys/types.h> does not define. */
/* #undef ssize_t */

/* Define to the type of an unsigned integer type of width exactly 16 bits if
   such a type exists and the standard includes do not define it. */
/* #undef uint16_t */

/* Define to the type of an unsigned integer type of width exactly 32 bits if
   such a type exists and the standard includes do not define it. */
/* #undef uint32_t */

/* Define to the type of an unsigned integer type of width exactly 64 bits if
   such a type exists and the standard includes do not define it. */
/* #undef uint64_t */

/* Define to the type of an unsigned integer type of width exactly 8 bits if
   such a type exists and the standard includes do not define it. */
/* #undef uint8_t */

/* Define as `fork' if `vfork' does not work. */
/* #undef vfork */