# makefile for fasta3, fasta3_t.  Use makefile.pvm for pvcompxx.
# this file works for Mac OS X (PPC)
#
# this file supports mmap()'ed databases in BLAST2 format use -DUSE_MMAP
# for mmap()ed BLAST2 format.

# the -DDEBUG option provides additional debugging information, particularly
# with -D on the command line.

# use -DBIG_LIB64 to generate 64-bit offsets in map_db .xin files

SHELL=/bin/bash

# in my hands, gcc-4.0 is about 40% slower than gcc-3.3 on the Altivec code
CC= gcc -g -O3 -arch ppc -falign-loops=32 -O3 -maltivec -mpim-altivec -force_cpusubtype_ALL 
LIB_DB=

# -pg -finstrument-functions  -lSaturn

#CC= gcc-3.3 -g -falign-loops=32 -O3 -mcpu=7450 -faltivec
#CC= gcc-3.3 -g -DDEBUG -mcpu=7450 -faltivec
#LIB_DB=-lz
#CC= cc -g -Wall -pedantic -faltivec
#
# standard line for normal searching
CFLAGS= -DSHOW_HELP -DSHOWSIM -DM10_CONS -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit  -DFASTA_HOST='"fasta.bioch.virginia.edu/fasta_www2"' -DUSE_MMAP -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DPGM_DOC -DBIG_LIB64 -DMAX_MEMK=2*1024*1024

# -DSUPERFAMNUM -DSFCHAR="'|'"

# add for MySQL support
# -I/usr/local/mysql/include -DMYSQL_DB

HFLAGS= -o
NFLAGS= -o

THR_SUBS = pthr_subs2
THR_LIBS =
THR_CC =

# for IBM with current pthreads
#CC= xlc_r -v -g
#THR_SUBS = ibm_pthr_subs2
#THR_LIBS = -lpthreads
#THR_CC =


BIN = ../bin
# diectory for universal binary process
UDIR = $(BIN)/ppc

#XDIR = ${HOME}/bin
#XDIR = /home/slib/bin/MACOSX/
#XDIR = /Users/seqprg/bin
XDIR = /seqprg/bin
#XDIR = ./ppc

# set up files for SSE2/Altivec acceleration
#
include ../make/Makefile.sse_alt

# Altivec acceleration
#
DROPGSW_O = $(DROPGSW_ALT_O)
DROPLAL_O = $(DROPLAL_ALT_O)
DROPGNW_O = $(DROPGNW_NA_O)
DROPLNW_O = $(DROPLNW_NA_O)

# provide mysql function
#include ../make/Makefile36m.common_sql

# no mysql
include ../make/Makefile36m.common