# Makefile
#
# Gnu Cygwin Makefile for PHYLIP 3.6.

PACKAGE=phylip
VERSION=3.69

# We use GNU's version of the make utility. It may be called "gmake" on
# your system.
#
# If you're using a RedHat Linux system with default locations for 
# gcc libraries, you probably don't need to change anything. You might
# might change the first noncomment statement below to redefine $(EXEDIR)
# if you'd like your executables installed in a different location than
# our default.
#
# Users with systems that differ substantially from ours may need to set
# the following variables: $(CC) $(CFLAGS) $(DFLAGS) $(LIBS) $(DLIBS)
#
# When uncompressed and extracted, the tar archive phylip-3.6x.tar.gz 
# produces the following directory structure:
#
#   phylip-3.6x/src -- the source code, including this Makefile
#   phylip-3.6x/exe -- executables, changed by changing $(EXEDIR) value
#   phylip-3.6x/doc -- html documentation
#
#  To use the PHYLIP v3.6 Makefile, type from the phylip-3.6x/src directory:
#      cp Makefile Makefile.unix
#      cp Makefile.cyg Makefile
#  and then do one of the following. (You can skip the copying steps
#  above and use "make -f Makefile.cyg ..." instead if you like.)
#
#      make install         to compile the whole package and install
#                           the executables in $(EXEDIR), and then
#                           remove the object files to save space
#
#      make all             to compile the whole package but not install it
#                           or remove the object files. 
#
#      make put             to move the executables into $(EXEDIR)
#
#      make clean           to remove all object files and executables from the
#                           current directory
#
#      make dnaml           to compile and link one program, (in this example,
#                           DnaML) and leave the executable and object files
#                           in the current directory (where the source code is).
#                           You will have to move the executable into the
#                           executables directory (e.g. "mv dnaml ../exe")
#                           Note that the program name should be lower case.
# 
# ----------------------------------------------------------------------------
#  (Starting here is the section where you may want to change things)
# ----------------------------------------------------------------------------
#
# the following specifies the directory where the executables will be placed
EXEDIR  = ../exe
#
# ----------------------------------------------------------------------------
#
# The following statements set these variables:
#
#    CC     -- the name (and, optionally, location) of your C compiler
#    CFLAGS -- compiler directives needed to compile most programs
#    DFLAGS -- compiler directives needed to compile draw programs
#    LIBS   -- non-default system libraries needed to compile most programs
#    DLIBS  -- non-default system libraries needed to compile draw programs
#
# We've provided a set of possible values for each variable.
#
# The value used is the one without a "#" at the beginning of the line.
#
# To try an alternate value, make sure the one you want has no "#"
# as its first character and that all other possibilities have "#" for
# their first character.
#
# Advanced users may need to further edit one of the alternatives in
# order to correctly compile on their system.
#
# ----------------------------------------------------------------------------
#
# The next two assignments are the invocations of the compiler
#
# This one specifies the "cc" C compiler
CC        = cc
#
#  To use GCC instead:
#CC        = gcc
#
# ----------------------------------------------------------------------------
#
# This is the CFLAGS statement. It specifies compiler behavior.
CFLAGS  = -mno-cygwin -DWIN32 -O3 -fomit-frame-pointer -ffast-math
#
# This is the DFLAGS statement. It specifies compiler behavior for the
# programs drawgram and drawtree.
DFLAGS  = $(CFLAGS)
#
# ----------------------------------------------------------------------------
#
# The cygwin compile automatically pics up the libraries we need, so
# the $(LIBS) variable is empty
LIBS    =
#
DLIBS	=	$(LIBS) -luser32 -lgdi32
#
# ----------------------------------------------------------------------------
#  (After this point there should not be any reason to change anything)
# ----------------------------------------------------------------------------

WINDRES		= windres
#
#
# the list of programs
# draw programs are listed last since they are the most likely to cause
# compilation or linking problems

PROGS   =		clique.exe \
				consense.exe \
				contml.exe \
				contrast.exe \
				dnacomp.exe \
				dnadist.exe \
				dnainvar.exe \
				dnaml.exe \
				dnamlk.exe \
				dnamove.exe \
				dnapars.exe \
				dnapenny.exe \
				dolmove.exe \
				dollop.exe \
				dolpenny.exe \
				factor.exe \
				fitch.exe \
				gendist.exe \
				kitsch.exe \
				mix.exe \
				move.exe \
				neighbor.exe \
				pars.exe \
				penny.exe \
				proml.exe \
				promlk.exe \
				protdist.exe \
				protpars.exe \
				restdist.exe \
				restml.exe \
				retree.exe \
				seqboot.exe \
				treedist.exe \
				drawgram.exe \
				drawtree.exe

#
# general commands
#

#  The first target it executed if you just type "make".  It tells you how to
#  use the Makefile.
#
help:
	@echo ""
	@echo " To use the PHYLIP v3.6 Makefile, type"
	@echo "     make install       to compile the whole package and install"
	@echo "                          the executables in $(EXEDIR), and then"
	@echo "                          remove the object files to save space"
	@echo "     make all           to compile the whole package but not install it"
	@echo "                          or remove the object files"
	@echo "     make put           to move the executables into $(EXEDIR)"
	@echo "     make clean         to remove all object files and executables from the"
	@echo "                          current directory"
	@echo "     make dnaml         to compile and link one program, (in this example,"
	@echo "                          Dnaml) and leave the executable and object files"
	@echo "                          in the current directory (where the source code is)."
	@echo "                          You will have to move the executable into the"
	@echo "                          executables directory (e.g. \"mv dnaml $(EXEDIR)\")"
	@echo "                          Note that the program name should be lower case."
	@echo " "

# The following is so that a command like
# make dnaml 
# will actually do something usefull
.PHONY :    clique consense contml contrast dnacomp dnadist \
                   dnainvar dnaml dnamlk dnamove dnapars dnapenny \
                   dolmove dollop dolpenny factor fitch gendist kitsch \
                   mix move neighbor pars penny proml promlk protdist \
                   protpars restdist restml retree seqboot treedist \
                   drawgram drawtree
 
clique: clique.exe
consense: consense.exe
contml: contml.exe
contrast: contrast.exe
dnacomp: dnacomp.exe
dnadist: dnadist.exe
dnaml: dnaml.exe
dnamlk: dnamlk.exe
dnainvar: dnainvar.exe
dnamove: dnamove.exe
dnapars: dnapars.exe
dnapenny: dnapenny.exe
dolmove: dolmove.exe
dollop: dollop.exe
dolpenny: dolpenny.exe
drawgram: drawgram.exe
drawtree: drawtree.exe
factor: factor.exe
fitch: fitch.exe
gendist: gendist.exe
kitsch: kitsch.exe
mix: mix.exe
move: move.exe
neighbor: neighbor.exe
pars: pars.exe
penny: penny.exe
proml: proml.exe
promlk: promlk.exe
protdist: protdist.exe
protpars: protpars.exe
restdist: restdist.exe
restml: restml.exe
retree: retree.exe
seqboot: seqboot.exe
treedist: treedist.exe

introduce:
	@echo "Building PHYLIP version $(VERSION)"

all:        introduce $(PROGS)
	@echo "Finished compiling."
	@echo ""

install:        all put clean
	@echo "Done."
	@echo ""

put:
	@echo "Stripping executables to save space"
	strip --strip-all *.exe 
	@echo "Installing PHYLIP v3.6 binaries in $(EXEDIR)"
	@mkdir -p $(EXEDIR)
	@cp $(PROGS) $(EXEDIR)
	@echo "Installing font files in $(EXEDIR)"
	@cp font* $(EXEDIR)
	@echo "Finished installation."
	@echo ""

clean:
	@echo "Removing object files to save space"
	@rm -f *.o
	@rm -f *.res
	@echo "Finished removing object files.  Now will remove"
	@echo "executable files from the current directory, but not from the"
	@echo "executables directory.  (If some are not here, the makefile"
	@echo "will terminate with an error message but this is not a problem)"
	@echo ""
	@echo "Removing executables from this directory"
	@rm -f $(PROGS)
	@echo "Finished cleanup."
	@echo ""

#
# compile object files shared between programs
# (make's implicit rule for %.o will take care of these)
#

phylip.o:     phylip.h
seq.o:        phylip.h seq.h
disc.o:       phylip.h disc.h
discrete.o:   phylip.h discrete.h
dollo.o:      phylip.h dollo.h
wagner.o:     phylip.h wagner.h
dist.o:       phylip.h dist.h
cont.o:       phylip.h cont.h
mlclock.o:    phylip.h mlclock.h
moves.o:      phylip.h moves.h
printree.o:   phylip.h printree.h


#
# compile the individual programs
#

clique.o:       clique.c disc.h phylip.h

clique.exe:       clique.o disc.o phylip.o clique.res 
	$(CC) $(CFLAGS) clique.o disc.o phylip.o clique.res $(LIBS) -o clique

cons.o:         cons.c cons.h phylip.h 

consense.o:     consense.c cons.h phylip.h

consense.exe:     consense.o phylip.o cons.o consense.res
	$(CC) $(CFLAGS) consense.o phylip.o cons.o consense.res $(LIBS) -o consense

contml.o:       contml.c cont.h phylip.h

contml.exe:       contml.o cont.o phylip.o contml.res
	$(CC) $(CFLAGS) contml.o cont.o phylip.o contml.res $(LIBS) -o contml

contrast.o:       contrast.c cont.h phylip.h

contrast.exe:       contrast.o contrast.res cont.o phylip.o
	$(CC) $(CFLAGS) contrast.o cont.o phylip.o contrast.res $(LIBS) -o contrast

dnacomp.o:      dnacomp.c seq.h phylip.h

dnacomp.exe:      dnacomp.o seq.o phylip.o dnacomp.res
	$(CC) $(CFLAGS) dnacomp.o seq.o phylip.o dnacomp.res $(LIBS) -o dnacomp

dnadist.o:      dnadist.c seq.h phylip.h

dnadist.exe:      dnadist.o seq.o phylip.o dnadist.res
	$(CC) $(CFLAGS) dnadist.o seq.o phylip.o dnadist.res $(LIBS) -o dnadist

dnainvar.o:      dnainvar.c seq.h phylip.h

dnainvar.exe:      dnainvar.o seq.o phylip.o dnainvar.res
	$(CC) $(CFLAGS) dnainvar.o seq.o phylip.o dnainvar.res $(LIBS) -o dnainvar

dnaml.o:      dnaml.c seq.h phylip.h

dnaml.exe:      dnaml.o seq.o phylip.o dnaml.res
	$(CC) $(CFLAGS) dnaml.o seq.o phylip.o dnaml.res $(LIBS) -o dnaml

dnamlk.o: seq.h phylip.h mlclock.h printree.h

dnamlk.exe:      dnamlk.o seq.o phylip.o mlclock.o printree.o dnamlk.res
	$(CC) $(CFLAGS) dnamlk.o seq.o phylip.o mlclock.o printree.o dnamlk.res $(LIBS) -o $@

dnamove.o:      dnamove.c seq.h moves.h phylip.h

dnamove.exe:      dnamove.o seq.o moves.o phylip.o dnamove.res
	$(CC) $(CFLAGS) dnamove.o seq.o moves.o phylip.o dnamove.res $(LIBS) -o dnamove

dnapenny.o:      dnapenny.c seq.h phylip.h

dnapenny.exe:      dnapenny.o seq.o phylip.o dnapenny.res
	$(CC) $(CFLAGS) dnapenny.o seq.o phylip.o dnapenny.res $(LIBS) -o dnapenny

dnapars.o:      dnapars.c seq.h phylip.h

dnapars.exe:      dnapars.o seq.o phylip.o dnapars.res
	$(CC) $(CFLAGS) dnapars.o seq.o phylip.o dnapars.res $(LIBS) -o dnapars

dolmove.o:       dolmove.c disc.h moves.h dollo.h phylip.h

dolmove.exe:       dolmove.o disc.o moves.o dollo.o phylip.o dolmove.res
	$(CC) $(CFLAGS) dolmove.o disc.o moves.o dollo.o phylip.o dolmove.res $(LIBS) -o dolmove

dollop.o:       dollop.c disc.h dollo.h phylip.h

dollop.exe:       dollop.o disc.o dollo.o phylip.o dollop.res
	$(CC) $(CFLAGS) dollop.o disc.o dollo.o phylip.o dollop.res $(LIBS) -o dollop

dolpenny.o:       dolpenny.c disc.h dollo.h phylip.h

dolpenny.exe:       dolpenny.o disc.o dollo.o phylip.o dolpenny.res
	$(CC) $(CFLAGS) dolpenny.o disc.o dollo.o phylip.o dolpenny.res $(LIBS) -o dolpenny

draw.o:   draw.c draw.h phylip.h 
	$(CC) $(DFLAGS) -c draw.c

draw2.o:   draw2.c draw.h phylip.h 
	$(CC) $(DFLAGS) -c draw2.c

drawgram.o:     drawgram.c draw.h phylip.h
	$(CC) $(DFLAGS) -c drawgram.c

drawgram.exe:     drawgram.o draw.o draw2.o phylip.o drawgram.res
	$(CC) $(DFLAGS) draw.o draw2.o drawgram.o phylip.o drawgram.res $(DLIBS) -o drawgram

drawtree.o:     drawtree.c draw.h phylip.h
	$(CC) $(DFLAGS) -c drawtree.c

drawtree.exe:     drawtree.o draw.o draw2.o phylip.o drawtree.res
	$(CC) $(DFLAGS) draw.o draw2.o drawtree.o phylip.o drawtree.res $(DLIBS) -o drawtree

factor.o:       factor.c phylip.h

factor.exe:       factor.o phylip.o factor.c factor.res
	$(CC) $(CFLAGS) factor.o phylip.o factor.res $(LIBS) -o factor

fitch.o:        fitch.c dist.h phylip.h

fitch.exe:        fitch.o dist.o phylip.o fitch.res
	$(CC) $(CFLAGS) fitch.o dist.o phylip.o fitch.res $(LIBS) -o fitch

gendist.o:      gendist.c phylip.h

gendist.exe:      gendist.o phylip.o gendist.res
	$(CC) $(CFLAGS) gendist.o phylip.o gendist.res $(LIBS) -o gendist

kitsch.o:        kitsch.c dist.h phylip.h

kitsch.exe:        kitsch.o dist.o phylip.o kitsch.res
	$(CC) $(CFLAGS) kitsch.o dist.o phylip.o kitsch.res $(LIBS) -o kitsch

mix.o:        mix.c disc.h wagner.h phylip.h

mix.exe:        mix.o disc.o wagner.o phylip.o mix.res
	$(CC) $(CFLAGS) mix.o disc.o wagner.o phylip.o mix.res $(LIBS) -o mix

move.o:        move.c disc.h moves.h wagner.h phylip.h

move.exe:        move.o disc.o moves.o wagner.o phylip.o move.c move.res
	$(CC) $(CFLAGS) move.o disc.o moves.o wagner.o phylip.o move.res $(LIBS) -o move

neighbor.o:        neighbor.c dist.h phylip.h

neighbor.exe:        neighbor.o dist.o phylip.o neighbor.res 
	$(CC) $(CFLAGS) neighbor.o dist.o phylip.o neighbor.res $(LIBS) -o neighbor

pars.o:   pars.c discrete.c discrete.h phylip.h

pars.exe: pars.o discrete.o phylip.o pars.res
	$(CC) $(CFLAGS) pars.o discrete.o phylip.o pars.res $(LIBS) -o pars

penny.o:  penny.c disc.h wagner.h phylip.h

penny.exe:  penny.o disc.o wagner.o phylip.o penny.res
	$(CC) $(CFLAGS) penny.o disc.o wagner.o  phylip.o penny.res $(LIBS) -o penny

proml.o:      proml.c seq.h phylip.h

proml.exe:      proml.o seq.o phylip.o proml.res
	$(CC) $(CFLAGS) proml.o seq.o phylip.o proml.res $(LIBS) -o proml

promlk.o: seq.h phylip.h mlclock.h printree.h

promlk.exe: promlk.o seq.o phylip.o mlclock.o printree.o promlk.res
	$(CC) $(CFLAGS) promlk.o seq.o phylip.o mlclock.o printree.o promlk.res $(LIBS) -o promlk

protdist.o:      protdist.c seq.h phylip.h

protdist.exe:      protdist.o seq.o phylip.o protdist.res
	$(CC) $(CFLAGS) protdist.o seq.o phylip.o protdist.res $(LIBS) -o protdist

protpars.o: protpars.c seq.h phylip.h

protpars.exe: protpars.o seq.o phylip.o protpars.res
	$(CC) $(CFLAGS) protpars.o seq.o phylip.o protpars.res $(LIBS) -o protpars

restdist.o: restdist.c seq.h phylip.h

restdist.exe: restdist.o restdist.res seq.o phylip.o restdist.res
	$(CC) $(CFLAGS) restdist.o seq.o phylip.o restdist.res $(LIBS) -o restdist

restml.o: restml.c seq.h phylip.h

restml.exe: restml.o seq.o phylip.o restml.res
	$(CC) $(CFLAGS) restml.o seq.o phylip.o restml.res $(LIBS) -o restml

retree.o:       retree.c moves.h phylip.h

retree.exe:       retree.o moves.o phylip.o retree.res
	$(CC) $(CFLAGS) retree.o moves.o phylip.o retree.res $(LIBS) -o retree

seqboot.o:      seqboot.c phylip.h

seqboot.exe:      seqboot.o seq.o phylip.o seqboot.res
	$(CC) $(CFLAGS) seqboot.o seq.o phylip.o seqboot.res $(LIBS) -o seqboot

treedist.o:     treedist.c cons.c cons.h phylip.h

treedist.exe:     treedist.o phylip.o cons.o treedist.res
	$(CC) $(CFLAGS) treedist.o cons.o phylip.o treedist.res $(LIBS) -o treedist

%.res: icons/%.rc
	$(WINDRES) $< -O coff -o $@

#
# Targets for making the Windows distribution archives
#

DISTDIR=$(PACKAGE)-$(VERSION)
ASCII_EXT= .c .h .html

SFX_STUB=SFXWiz32.exe

DIST_COMMON = phylip.html 

DOCS= doc/clique.html doc/consense.html doc/contchar.html doc/contml.html \
      doc/contrast.html doc/discrete.html doc/distance.html doc/dnacomp.html \
      doc/dnadist.html doc/dnainvar.html doc/dnaml.html doc/dnamlk.html \
      doc/dnamove.html doc/dnapars.html doc/dnapenny.html doc/dollop.html \
      doc/dolmove.html doc/dolpenny.html doc/drawgram.html doc/draw.html \
      doc/drawtree.html doc/factor.html doc/fitch.html doc/gendist.html \
      doc/kitsch.html doc/main.html doc/mix.html doc/move.html \
      doc/neighbor.html doc/pars.html doc/penny.html doc/proml.html \
      doc/promlk.html doc/protdist.html doc/protpars.html doc/restdist.html \
      doc/restml.html doc/retree.html doc/seqboot.html doc/sequence.html \
      doc/treedist.html doc/phylip.gif

SOURCES= Makefile Makefile.bcc Makefile.cyg Makefile.msvc \
	 Makefile.osx compalpha.com clique.c cons.c consense.c cons.h cont.c \
	 cont.h contml.c contrast.c disc.c disc.h discrete.c discrete.h dist.c \
	 dist.h dnacomp.c dnadist.c dnainvar.c dnaml.c dnamlk.c dnamove.c \
	 dnapars.c dnapenny.c dollo.c dollo.h dollop.c dolmove.c dolpenny.c \
	 draw2.c draw.c drawgram.c draw.h drawtree.c factor.c fitch.c gendist.c \
	 interface.c interface.h io.h kitsch.c macface.c macface.h mix.c move.c \
	 moves.c moves.h neighbor.c newmove.c pars.c penny.c \
	 phylip.c phylip.h proml.c promlk.c protdist.c protpars.c restdist.c \
	 restml.c retree.c seqboot.c seq.c seq.h treedist.c wagner.c wagner.h \
	 mlclock.c mlclock.h printree.c printree.h font1 font2 font3 font4 font5 font6

ICONS= 		icons/boot.ico icons/clique.ico icons/clique.rc icons/clique.rcb icons/consense.ico \
		icons/consense.rc icons/consense.rcb icons/contml.ico icons/contml.rc icons/contml.rcb \
		icons/contrast.ico icons/contrast.rc icons/contrast.rcb icons/disc.ico icons/dist.ico icons/dna.ico \
		icons/dnacomp.rc icons/dnacomp.rcb icons/dnadist.rc icons/dnadist.rcb icons/dnainvar.rc \
		icons/dnainvar.rcb icons/dnaml.rc icons/dnaml.rcb icons/dnamlk.rc icons/dnamlk.rcb icons/dnamove.rc \
		icons/dnamove.rcb icons/dnapars.rc icons/dnapars.rcb icons/dnapenny.rc icons/dnapenny.rcb \
		icons/dollo.ico icons/dollop.rc icons/dollop.rcb icons/dolmove.rc icons/dolmove.rcb \
		icons/dolpenny.rc icons/dolpenny.rcb icons/drawgram.ico icons/drawgram.rc icons/drawgram.rcb \
		icons/drawtree.ico icons/drawtree.rc icons/drawtree.rcb icons/factor.rc icons/factor.rcb \
		icons/fitch.rc icons/fitch.rcb icons/gendist.ico icons/gendist.rc icons/gendist.rcb icons/kitsch.rc \
		icons/kitsch.rcb icons/mix.rc icons/mix.rcb icons/move.rc icons/move.rcb icons/neighbor.rc \
		icons/neighbor.rcb icons/pars.rc icons/pars.rcb icons/penny.rc icons/penny.rcb icons/proml.rc \
		icons/proml.rcb icons/promlk.rc icons/promlk.rcb icons/protdist.rc icons/protdist.rcb \
		icons/protein.ico icons/protpars.rc icons/protpars.rcb icons/restdist.rc icons/restdist.rcb \
		icons/restml.rc icons/restml.rcb icons/restrict.ico icons/retree.ico icons/retree.rc \
		icons/retree.rcb icons/seqboot.rc icons/seqboot.rcb icons/treedist.ico icons/treedist.rc \
		icons/treedist.rcb

W_EXES =	dnacomp.exe dnadist.exe dnainvar.exe dnaml.exe dnamlk.exe \
              dnamove.exe dnapars.exe dnapenny.exe proml.exe promlk.exe \
              protdist.exe protpars.exe restdist.exe restml.exe seqboot.exe \
              clique.exe consense.exe contml.exe contrast.exe dollop.exe \
              dolmove.exe dolpenny.exe drawgram.exe drawtree.exe factor.exe \
              fitch.exe font1 font2 font3 font4 font5 font6 gendist.exe \
              kitsch.exe mix.exe move.exe neighbor.exe pars.exe penny.exe \
              retree.exe treedist.exe

.PHONY : phylipwdir phylipw.zip

dists : dist sfx zips sfxs

sfxs : phylipw.exe

zips : phylipw.zip

phylipw.exe : phylipw.zip
	cat $(SFX_STUB) phylipw.zip > phylipw.exe \
	  && chmod 755 phylipw.exe

phylipw.zip : phylipwdir
	@rm -f phylipw.zip
	cd phylipw && zip -q -r ../phylipw.zip *
	rm -rf phylipw

phylipwdir : $(DOCS) $(SOURCES) $(ICONS)
	rm -rf phylipw
	mkdir phylipw
	mkdir phylipw/$(DISTDIR)
	mkdir phylipw/$(DISTDIR)/src
	mkdir phylipw/$(DISTDIR)/doc
	mkdir phylipw/$(DISTDIR)/exe
	mkdir phylipw/$(DISTDIR)/src/icons
	for i in $(DIST_COMMON) ; do \
	  cp $$i phylipw/$(DISTDIR) ; \
	done
	for i in $(DOCS) ; do \
	  cp $$i phylipw/$(DISTDIR)/doc ; \
	done
	for i in $(SOURCES) ; do \
	  cp $$i phylipw/$(DISTDIR)/src ; \
	done
	for i in $(ICONS) ; do \
	  cp $$i phylipw/$(DISTDIR)/src/icons ; \
	done
	@for i in $(ASCII_EXT) ; do \
	  echo "Translating newline characters on *$$i..." ; \
	  find phylipw -name "*$$i" \
	    -exec sed -i -e 's/$$/\r/g' '{}' ';' ; \
	done

sfx : dist
	@echo "Creating self-extracting zip archive $(DISTDIR).exe"
	cat $(SFX_STUB) $(DISTDIR).zip > $(DISTDIR).exe \
	  && chmod 755 $(DISTDIR).exe

dist : distdir
	-rm -rf $(DISTDIR).zip
	@echo "Creating ZIP archive $(DISTDIR).zip"
	zip -q -r $(DISTDIR).zip $(DISTDIR)
	rm -rf $(DISTDIR)
        

distdir : $(DIST_COMMON) $(DOCS) $(SOURCES) $(ICONS)
	-rm -rf $(DISTDIR)
	mkdir $(DISTDIR)
	mkdir $(DISTDIR)/doc
	mkdir $(DISTDIR)/exe
	mkdir $(DISTDIR)/src
	mkdir $(DISTDIR)/src/icons
	@echo "Copying common files to $(DISTDIR)..."
	@for i in $(DIST_COMMON) ; do \
	  cp $$i $(DISTDIR) ; \
	done 
	@echo "Copying sources to $(DISTDIR)/src..."
	@for i in $(SOURCES) ; do \
	  cp $$i $(DISTDIR)/src ; \
	done
	@echo "Copying icons to $(DISTDIR)/src/icons..."
	@for i in $(ICONS) ; do \
	  cp $$i $(DISTDIR)/src/icons ; \
	done
	@echo "Copying docs to $(DISTDIR)/docs..."
	@for i in $(DOCS) ; do \
	  cp $$i $(DISTDIR)/doc ; \
	done
	@echo "Copying executables to $(DISTDIR)/exe..."
	@for i in $(W_EXES) ; do \
	  cp $$i $(DISTDIR)/exe ; \
	done
	@for i in $(ASCII_EXT) ; do \
	  echo "Translating newline characters on *$$i..." ; \
	  find $(DISTDIR) -name "*$$i" \
	    -exec sed -i -e 's/$$/\r/g' '{}' ';' ; \
	done

distclean : clean
	@echo -n "Removing dists..."
	@for i in $(DISTDIR) $(DISTDIR).zip $(DISTDIR).exe $(DISTDIR).tar.gz \
	  phylipw.zip phylipw.exe ; do \
	  rm -rf $$i ; \
	done
	@echo "done."
	

# vim: noet