This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by io_lib configure 1.14.15, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --enable-shared=no --without-libcurl --prefix=/home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/install LDFLAGS= CFLAGS= CC=/usr/bin/cc CXX=/usr/bin/c++ ## --------- ## ## Platform. ## ## --------- ## hostname = venus.cc.umanitoba.ca uname -m = x86_64 uname -r = 4.18.0-477.21.1.el8_8.x86_64 uname -s = Linux uname -v = #1 SMP Thu Jul 20 08:38:27 EDT 2023 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/psgendb/BIRCHDEV/local/script PATH: /home/psgendb/BIRCHDEV/local/bin-linux-x86_64 PATH: /usr/share/Modules/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /opt/thinlinc/bin PATH: /usr/bin/X11 PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /home/psgendb/BIRCHDEV/script PATH: /home/psgendb/BIRCHDEV/bin-linux-x86_64 PATH: /home/psgendb/BIRCHDEV/local/pkg/EMBOSS/linux-x86_64/bin PATH: /home/psgendb/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2562: checking for a BSD-compatible install configure:2630: result: /usr/bin/install -c configure:2641: checking whether build environment is sane configure:2696: result: yes configure:2847: checking for a thread-safe mkdir -p configure:2886: result: /usr/bin/mkdir -p configure:2893: checking for gawk configure:2909: found /usr/bin/gawk configure:2920: result: gawk configure:2931: checking whether make sets $(MAKE) configure:2953: result: yes configure:2982: checking whether make supports nested variables configure:2999: result: yes configure:3126: checking whether to enable maintainer-specific portions of Makefiles configure:3135: result: no configure:3376: checking for gcc configure:3403: result: /usr/bin/cc configure:3632: checking for C compiler version configure:3641: /usr/bin/cc --version >&5 cc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-18) Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3652: $? = 0 configure:3641: /usr/bin/cc -v >&5 Using built-in specs. COLLECT_GCC=/usr/bin/cc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-18) (GCC) configure:3652: $? = 0 configure:3641: /usr/bin/cc -V >&5 cc: error: unrecognized command line option '-V' cc: fatal error: no input files compilation terminated. configure:3652: $? = 1 configure:3641: /usr/bin/cc -qversion >&5 cc: error: unrecognized command line option '-qversion'; did you mean '--version'? cc: fatal error: no input files compilation terminated. configure:3652: $? = 1 configure:3672: checking whether the C compiler works configure:3694: /usr/bin/cc conftest.c >&5 configure:3698: $? = 0 configure:3746: result: yes configure:3749: checking for C compiler default output file name configure:3751: result: a.out configure:3757: checking for suffix of executables configure:3764: /usr/bin/cc -o conftest conftest.c >&5 configure:3768: $? = 0 configure:3790: result: configure:3812: checking whether we are cross compiling configure:3820: /usr/bin/cc -o conftest conftest.c >&5 configure:3824: $? = 0 configure:3831: ./conftest configure:3835: $? = 0 configure:3850: result: no configure:3855: checking for suffix of object files configure:3877: /usr/bin/cc -c conftest.c >&5 configure:3881: $? = 0 configure:3902: result: o configure:3906: checking whether we are using the GNU C compiler configure:3925: /usr/bin/cc -c conftest.c >&5 configure:3925: $? = 0 configure:3934: result: yes configure:3943: checking whether /usr/bin/cc accepts -g configure:3963: /usr/bin/cc -c -g conftest.c >&5 configure:3963: $? = 0 configure:4004: result: yes configure:4021: checking for /usr/bin/cc option to accept ISO C89 configure:4084: /usr/bin/cc -c conftest.c >&5 configure:4084: $? = 0 configure:4097: result: none needed configure:4122: checking whether /usr/bin/cc understands -c and -o together configure:4144: /usr/bin/cc -c conftest.c -o conftest2.o configure:4147: $? = 0 configure:4144: /usr/bin/cc -c conftest.c -o conftest2.o configure:4147: $? = 0 configure:4159: result: yes configure:4187: checking for style of include used by make configure:4215: result: GNU configure:4241: checking dependency style of /usr/bin/cc configure:4352: result: gcc3 configure:4397: checking build system type configure:4411: result: x86_64-pc-linux-gnu configure:4431: checking host system type configure:4444: result: x86_64-pc-linux-gnu configure:4485: checking how to print strings configure:4512: result: printf configure:4533: checking for a sed that does not truncate output configure:4597: result: /usr/bin/sed configure:4615: checking for grep that handles long lines and -e configure:4673: result: /usr/bin/grep configure:4678: checking for egrep configure:4740: result: /usr/bin/grep -E configure:4745: checking for fgrep configure:4807: result: /usr/bin/grep -F configure:4842: checking for ld used by /usr/bin/cc configure:4909: result: /usr/bin/ld configure:4916: checking if the linker (/usr/bin/ld) is GNU ld configure:4931: result: yes configure:4943: checking for BSD- or MS-compatible name lister (nm) configure:4997: result: /usr/bin/nm -B configure:5127: checking the name lister (/usr/bin/nm -B) interface configure:5134: /usr/bin/cc -c conftest.c >&5 configure:5137: /usr/bin/nm -B "conftest.o" configure:5140: output 0000000000000000 B some_variable configure:5147: result: BSD nm configure:5150: checking whether ln -s works configure:5154: result: yes configure:5162: checking the maximum length of command line arguments configure:5293: result: 1572864 configure:5341: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:5381: result: func_convert_file_noop configure:5388: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:5408: result: func_convert_file_noop configure:5415: checking for /usr/bin/ld option to reload object files configure:5422: result: -r configure:5496: checking for objdump configure:5512: found /usr/bin/objdump configure:5523: result: objdump configure:5555: checking how to recognize dependent libraries configure:5755: result: pass_all configure:5840: checking for dlltool configure:5870: result: no configure:5900: checking how to associate runtime and link libraries configure:5927: result: printf %s\n configure:5988: checking for ar configure:6004: found /usr/bin/ar configure:6015: result: ar configure:6052: checking for archiver @FILE support configure:6069: /usr/bin/cc -c conftest.c >&5 configure:6069: $? = 0 configure:6072: ar cru libconftest.a @conftest.lst >&5 configure:6075: $? = 0 configure:6080: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:6083: $? = 1 configure:6095: result: @ configure:6153: checking for strip configure:6169: found /usr/bin/strip configure:6180: result: strip configure:6252: checking for ranlib configure:6268: found /usr/bin/ranlib configure:6279: result: ranlib configure:6381: checking command to parse /usr/bin/nm -B output from /usr/bin/cc object configure:6534: /usr/bin/cc -c conftest.c >&5 configure:6537: $? = 0 configure:6541: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6544: $? = 0 configure:6610: /usr/bin/cc -o conftest conftest.c conftstm.o >&5 configure:6613: $? = 0 configure:6651: result: ok configure:6698: checking for sysroot configure:6728: result: no configure:6735: checking for a working dd configure:6773: result: /usr/bin/dd configure:6777: checking how to truncate binary pipes configure:6792: result: /usr/bin/dd bs=4096 count=1 configure:6928: /usr/bin/cc -c conftest.c >&5 configure:6931: $? = 0 configure:7121: checking for mt configure:7151: result: no configure:7171: checking if : is a manifest tool configure:7177: : '-?' configure:7185: result: no configure:7862: checking how to run the C preprocessor configure:7893: /usr/bin/cc -E conftest.c configure:7893: $? = 0 configure:7907: /usr/bin/cc -E conftest.c conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:7907: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "io_lib" | #define PACKAGE_TARNAME "io_lib" | #define PACKAGE_VERSION "1.14.15" | #define PACKAGE_STRING "io_lib 1.14.15" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "io_lib" | #define VERSION "1.14.15" | /* end confdefs.h. */ | #include configure:7932: result: /usr/bin/cc -E configure:7952: /usr/bin/cc -E conftest.c configure:7952: $? = 0 configure:7966: /usr/bin/cc -E conftest.c conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:7966: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "io_lib" | #define PACKAGE_TARNAME "io_lib" | #define PACKAGE_VERSION "1.14.15" | #define PACKAGE_STRING "io_lib 1.14.15" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "io_lib" | #define VERSION "1.14.15" | /* end confdefs.h. */ | #include configure:7995: checking for ANSI C header files configure:8015: /usr/bin/cc -c conftest.c >&5 configure:8015: $? = 0 configure:8088: /usr/bin/cc -o conftest conftest.c >&5 configure:8088: $? = 0 configure:8088: ./conftest configure:8088: $? = 0 configure:8099: result: yes configure:8112: checking for sys/types.h configure:8112: /usr/bin/cc -c conftest.c >&5 configure:8112: $? = 0 configure:8112: result: yes configure:8112: checking for sys/stat.h configure:8112: /usr/bin/cc -c conftest.c >&5 configure:8112: $? = 0 configure:8112: result: yes configure:8112: checking for stdlib.h configure:8112: /usr/bin/cc -c conftest.c >&5 configure:8112: $? = 0 configure:8112: result: yes configure:8112: checking for string.h configure:8112: /usr/bin/cc -c conftest.c >&5 configure:8112: $? = 0 configure:8112: result: yes configure:8112: checking for memory.h configure:8112: /usr/bin/cc -c conftest.c >&5 configure:8112: $? = 0 configure:8112: result: yes configure:8112: checking for strings.h configure:8112: /usr/bin/cc -c conftest.c >&5 configure:8112: $? = 0 configure:8112: result: yes configure:8112: checking for inttypes.h configure:8112: /usr/bin/cc -c conftest.c >&5 configure:8112: $? = 0 configure:8112: result: yes configure:8112: checking for stdint.h configure:8112: /usr/bin/cc -c conftest.c >&5 configure:8112: $? = 0 configure:8112: result: yes configure:8112: checking for unistd.h configure:8112: /usr/bin/cc -c conftest.c >&5 configure:8112: $? = 0 configure:8112: result: yes configure:8126: checking for dlfcn.h configure:8126: /usr/bin/cc -c conftest.c >&5 configure:8126: $? = 0 configure:8126: result: yes configure:8382: checking for objdir configure:8397: result: .libs configure:8661: checking if /usr/bin/cc supports -fno-rtti -fno-exceptions configure:8679: /usr/bin/cc -c -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C configure:8683: $? = 0 configure:8696: result: no configure:9054: checking for /usr/bin/cc option to produce PIC configure:9061: result: -fPIC -DPIC configure:9069: checking if /usr/bin/cc PIC flag -fPIC -DPIC works configure:9087: /usr/bin/cc -c -fPIC -DPIC -DPIC conftest.c >&5 configure:9091: $? = 0 configure:9104: result: yes configure:9133: checking if /usr/bin/cc static flag -static works configure:9161: result: no configure:9176: checking if /usr/bin/cc supports -c -o file.o configure:9197: /usr/bin/cc -c -o out/conftest2.o conftest.c >&5 configure:9201: $? = 0 configure:9223: result: yes configure:9231: checking if /usr/bin/cc supports -c -o file.o configure:9278: result: yes configure:9311: checking whether the /usr/bin/cc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10574: result: yes configure:10814: checking dynamic linker characteristics configure:11395: /usr/bin/cc -o conftest -Wl,-rpath -Wl,/foo conftest.c >&5 configure:11395: $? = 0 configure:11644: result: GNU/Linux ld.so configure:11766: checking how to hardcode library paths into programs configure:11791: result: immediate configure:12339: checking whether stripping libraries is possible configure:12344: result: yes configure:12379: checking if libtool supports shared libraries configure:12381: result: yes configure:12384: checking whether to build shared libraries configure:12409: result: no configure:12412: checking whether to build static libraries configure:12416: result: yes configure:12479: checking for grep that handles long lines and -e configure:12537: result: /usr/bin/grep configure:12550: checking for C compiler warning flags configure:12648: result: -Wall configure:13186: checking for inflateEnd in -lz configure:13211: /usr/bin/cc -o conftest -Wall conftest.c -lz >&5 configure:13211: $? = 0 configure:13220: result: yes configure:13223: checking zlib.h usability configure:13223: /usr/bin/cc -c -Wall conftest.c >&5 configure:13223: $? = 0 configure:13223: result: yes configure:13223: checking zlib.h presence configure:13223: /usr/bin/cc -E conftest.c configure:13223: $? = 0 configure:13223: result: yes configure:13223: checking for zlib.h configure:13223: result: yes configure:13264: checking for library containing gethostbyname configure:13295: /usr/bin/cc -o conftest -Wall conftest.c >&5 configure:13295: $? = 0 configure:13312: result: none required configure:13320: checking for library containing socket configure:13351: /usr/bin/cc -o conftest -Wall conftest.c >&5 configure:13351: $? = 0 configure:13368: result: none required configure:13429: checking for BZ2_bzBuffToBuffCompress in -lbz2 configure:13454: /usr/bin/cc -o conftest -Wall conftest.c -lbz2 >&5 configure:13454: $? = 0 configure:13463: result: yes configure:13496: checking for lzma_easy_buffer_encode in -llzma configure:13521: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 configure:13521: $? = 0 configure:13530: result: yes configure:13552: checking for bsc_compress in -lbsc configure:13577: /usr/bin/cc -o conftest -Wall conftest.c -lbsc -llzma -lbz2 >&5 /usr/bin/ld: cannot find -lbsc collect2: error: ld returned 1 exit status configure:13577: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "io_lib" | #define PACKAGE_TARNAME "io_lib" | #define PACKAGE_VERSION "1.14.15" | #define PACKAGE_STRING "io_lib 1.14.15" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "io_lib" | #define VERSION "1.14.15" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ZLIB 1 | #define HAVE_LIBBZ2 1 | #define HAVE_LIBLZMA 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char bsc_compress (); | int | main () | { | return bsc_compress (); | ; | return 0; | } configure:13586: result: no configure:13879: checking whether byte ordering is bigendian configure:13894: /usr/bin/cc -c -Wall conftest.c >&5 conftest.c:27:9: error: unknown type name 'not' not a universal capable compiler ^~~ conftest.c:27:15: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'universal' not a universal capable compiler ^~~~~~~~~ conftest.c:27:15: error: unknown type name 'universal' configure:13894: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "io_lib" | #define PACKAGE_TARNAME "io_lib" | #define PACKAGE_VERSION "1.14.15" | #define PACKAGE_STRING "io_lib 1.14.15" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "io_lib" | #define VERSION "1.14.15" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ZLIB 1 | #define HAVE_LIBBZ2 1 | #define HAVE_LIBLZMA 1 | /* end confdefs.h. */ | #ifndef __APPLE_CC__ | not a universal capable compiler | #endif | typedef int dummy; | configure:13939: /usr/bin/cc -c -Wall conftest.c >&5 configure:13939: $? = 0 configure:13957: /usr/bin/cc -c -Wall conftest.c >&5 conftest.c: In function 'main': conftest.c:33:4: error: unknown type name 'not'; did you mean 'ino_t'? not big endian ^~~ ino_t conftest.c:33:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian' not big endian ^~~~~~ configure:13957: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "io_lib" | #define PACKAGE_TARNAME "io_lib" | #define PACKAGE_VERSION "1.14.15" | #define PACKAGE_STRING "io_lib 1.14.15" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "io_lib" | #define VERSION "1.14.15" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ZLIB 1 | #define HAVE_LIBBZ2 1 | #define HAVE_LIBLZMA 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:14085: result: no configure:14125: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 configure:14125: $? = 0 configure:14139: checking for ANSI C header files configure:14243: result: yes configure:14251: checking for sys/wait.h that is POSIX.1 compatible configure:14277: /usr/bin/cc -c -Wall conftest.c >&5 configure:14277: $? = 0 configure:14284: result: yes configure:14295: checking fcntl.h usability configure:14295: /usr/bin/cc -c -Wall conftest.c >&5 configure:14295: $? = 0 configure:14295: result: yes configure:14295: checking fcntl.h presence configure:14295: /usr/bin/cc -E conftest.c configure:14295: $? = 0 configure:14295: result: yes configure:14295: checking for fcntl.h configure:14295: result: yes configure:14295: checking limits.h usability configure:14295: /usr/bin/cc -c -Wall conftest.c >&5 configure:14295: $? = 0 configure:14295: result: yes configure:14295: checking limits.h presence configure:14295: /usr/bin/cc -E conftest.c configure:14295: $? = 0 configure:14295: result: yes configure:14295: checking for limits.h configure:14295: result: yes configure:14295: checking for unistd.h configure:14295: result: yes configure:14295: checking malloc.h usability configure:14295: /usr/bin/cc -c -Wall conftest.c >&5 configure:14295: $? = 0 configure:14295: result: yes configure:14295: checking malloc.h presence configure:14295: /usr/bin/cc -E conftest.c configure:14295: $? = 0 configure:14295: result: yes configure:14295: checking for malloc.h configure:14295: result: yes configure:14305: checking for zlib.h configure:14305: result: yes configure:14311: checking stdio_ext.h usability configure:14311: /usr/bin/cc -c -Wall conftest.c >&5 configure:14311: $? = 0 configure:14311: result: yes configure:14311: checking stdio_ext.h presence configure:14311: /usr/bin/cc -E conftest.c configure:14311: $? = 0 configure:14311: result: yes configure:14311: checking for stdio_ext.h configure:14311: result: yes configure:14320: checking whether byte ordering is bigendian configure:14526: result: no configure:14548: checking size of short configure:14553: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 configure:14553: $? = 0 configure:14553: ./conftest configure:14553: $? = 0 configure:14567: result: 2 configure:14581: checking size of int configure:14586: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 configure:14586: $? = 0 configure:14586: ./conftest configure:14586: $? = 0 configure:14600: result: 4 configure:14614: checking size of long configure:14619: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 configure:14619: $? = 0 configure:14619: ./conftest configure:14619: $? = 0 configure:14633: result: 8 configure:14643: checking for inline configure:14659: /usr/bin/cc -c -Wall conftest.c >&5 configure:14659: $? = 0 configure:14667: result: inline configure:14685: checking for mode_t configure:14685: /usr/bin/cc -c -Wall conftest.c >&5 configure:14685: $? = 0 configure:14685: /usr/bin/cc -c -Wall conftest.c >&5 conftest.c: In function 'main': conftest.c:72:21: error: expected expression before ')' token if (sizeof ((mode_t))) ^ configure:14685: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "io_lib" | #define PACKAGE_TARNAME "io_lib" | #define PACKAGE_VERSION "1.14.15" | #define PACKAGE_STRING "io_lib 1.14.15" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "io_lib" | #define VERSION "1.14.15" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ZLIB 1 | #define HAVE_LIBBZ2 1 | #define HAVE_LIBLZMA 1 | #define HAVE_VA_COPY 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((mode_t))) | return 0; | ; | return 0; | } configure:14685: result: yes configure:14728: checking for fileno configure:14728: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 configure:14728: $? = 0 configure:14728: result: yes configure:14739: checking for fstat configure:14739: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 configure:14739: $? = 0 configure:14739: result: yes configure:14750: checking for mallopt configure:14750: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 configure:14750: $? = 0 configure:14750: result: yes configure:14767: checking for special C compiler options needed for large files configure:14812: result: no configure:14818: checking for _FILE_OFFSET_BITS value needed for large files configure:14843: /usr/bin/cc -c -Wall conftest.c >&5 configure:14843: $? = 0 configure:14875: result: no configure:14960: checking for _LARGEFILE_SOURCE value needed for large files configure:14979: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 configure:14979: $? = 0 configure:15007: result: no configure:15035: checking for stdlib.h configure:15035: result: yes configure:15035: checking for unistd.h configure:15035: result: yes configure:15035: checking for sys/param.h configure:15035: /usr/bin/cc -c -Wall conftest.c >&5 configure:15035: $? = 0 configure:15035: result: yes configure:15055: checking for getpagesize configure:15055: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 configure:15055: $? = 0 configure:15055: result: yes configure:15064: checking for working mmap configure:15213: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 configure:15213: $? = 0 configure:15213: ./conftest configure:15213: $? = 0 configure:15223: result: yes configure:15233: checking for library containing pthread_join configure:15264: /usr/bin/cc -o conftest -Wall conftest.c -llzma -lbz2 >&5 /usr/bin/ld: /tmp/ccqpWI9x.o: undefined reference to symbol 'pthread_join@@GLIBC_2.2.5' //usr/lib64/libpthread.so.0: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status configure:15264: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "io_lib" | #define PACKAGE_TARNAME "io_lib" | #define PACKAGE_VERSION "1.14.15" | #define PACKAGE_STRING "io_lib 1.14.15" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "io_lib" | #define VERSION "1.14.15" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ZLIB 1 | #define HAVE_LIBBZ2 1 | #define HAVE_LIBLZMA 1 | #define HAVE_VA_COPY 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define IOLIB_CRC 1 | #define HAVE_FILENO 1 | #define HAVE_FSTAT 1 | #define HAVE_MALLOPT 1 | #define HAVE_FSEEKO 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pthread_join (); | int | main () | { | return pthread_join (); | ; | return 0; | } configure:15264: /usr/bin/cc -o conftest -Wall conftest.c -lpthread -llzma -lbz2 >&5 configure:15264: $? = 0 configure:15281: result: -lpthread configure:15289: checking for library containing cos configure:15320: /usr/bin/cc -o conftest -Wall conftest.c -lpthread -llzma -lbz2 >&5 conftest.c:53:6: warning: conflicting types for built-in function 'cos' [-Wbuiltin-declaration-mismatch] char cos (); ^~~ /tmp/cc38YRO1.o: In function `main': conftest.c:(.text+0xa): undefined reference to `cos' collect2: error: ld returned 1 exit status configure:15320: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "io_lib" | #define PACKAGE_TARNAME "io_lib" | #define PACKAGE_VERSION "1.14.15" | #define PACKAGE_STRING "io_lib 1.14.15" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "io_lib" | #define VERSION "1.14.15" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ZLIB 1 | #define HAVE_LIBBZ2 1 | #define HAVE_LIBLZMA 1 | #define HAVE_VA_COPY 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define IOLIB_CRC 1 | #define HAVE_FILENO 1 | #define HAVE_FSTAT 1 | #define HAVE_MALLOPT 1 | #define HAVE_FSEEKO 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cos (); | int | main () | { | return cos (); | ; | return 0; | } configure:15320: /usr/bin/cc -o conftest -Wall conftest.c -lm -lpthread -llzma -lbz2 >&5 conftest.c:53:6: warning: conflicting types for built-in function 'cos' [-Wbuiltin-declaration-mismatch] char cos (); ^~~ configure:15320: $? = 0 configure:15337: result: -lm configure:15347: checking for strdup configure:15347: /usr/bin/cc -o conftest -Wall conftest.c -lm -lpthread -llzma -lbz2 >&5 conftest.c:69:6: warning: conflicting types for built-in function 'strdup' [-Wbuiltin-declaration-mismatch] char strdup (); ^~~~~~ configure:15347: $? = 0 configure:15347: result: yes configure:15358: checking for fsync configure:15358: /usr/bin/cc -o conftest -Wall conftest.c -lm -lpthread -llzma -lbz2 >&5 configure:15358: $? = 0 configure:15358: result: yes configure:15485: checking that generated files are newer than configure configure:15491: result: done configure:15514: === configuring in htscodecs (/home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/htscodecs) configure:15591: running /bin/sh ./configure '--prefix=/home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/install' --disable-option-checking '--enable-shared=no' '--without-libcurl' 'LDFLAGS=' 'CFLAGS=' 'CC=/usr/bin/cc' 'CXX=/usr/bin/c++' '--disable-shared' '--with-pic' '--srcdir=.' --cache-file= configure:15626: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by io_lib config.status 1.14.15, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on venus.cc.umanitoba.ca config.status:1139: creating Makefile config.status:1139: creating io_lib/Makefile config.status:1139: creating progs/Makefile config.status:1139: creating tests/Makefile config.status:1139: creating io_lib-config config.status:1139: creating io_lib/os.h config.status:1139: creating io_lib/version.h config.status:1139: creating io_lib_config.h config.status:1368: executing depfiles commands config.status:1368: executing libtool commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_bigendian=no ac_cv_c_compiler_gnu=yes ac_cv_c_inline=inline ac_cv_env_CC_set=set ac_cv_env_CC_value=/usr/bin/cc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_fileno=yes ac_cv_func_fstat=yes ac_cv_func_fsync=yes ac_cv_func_getpagesize=yes ac_cv_func_mallopt=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_strdup=yes ac_cv_header_dlfcn_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_limits_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdio_ext_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_sys_wait_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_lib_bsc_bsc_compress=no ac_cv_lib_bz2_BZ2_bzBuffToBuffCompress=yes ac_cv_lib_lzma_lzma_easy_buffer_encode=yes ac_cv_lib_z_inflateEnd=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/usr/bin/dd ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='/usr/bin/cc -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=/usr/bin/cc ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_cos=-lm ac_cv_search_gethostbyname='none required' ac_cv_search_pthread_join=-lpthread ac_cv_search_socket='none required' ac_cv_sizeof_int=4 ac_cv_sizeof_long=8 ac_cv_sizeof_short=2 ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no ac_cv_sys_largefile_source=no ac_cv_type_mode_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes lt_cv_ar_at_file=@ lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_gnu_ld=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/usr/bin/dd bs=4096 count=1' vl_cv_prog_cc_warnings=-Wall ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing aclocal-1.15' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AUTOCONF='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing autoconf' AUTOHEADER='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing autoheader' AUTOMAKE='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing automake-1.15' AWK='gawk' CC='/usr/bin/cc' CCDEPMODE='depmode=gcc3' CFLAGS='-Wall ' CPP='/usr/bin/cc -E' CPPFLAGS='' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' EXEEXT='' FGREP='/usr/bin/grep -F' GREP='/usr/bin/grep' HAVE_LIBDEFLATE_FALSE='' HAVE_LIBDEFLATE_TRUE='#' HAVE_ZLIB_FALSE='#' HAVE_ZLIB_TRUE='' HAVE_ZSTD_FALSE='' HAVE_ZSTD_TRUE='#' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' IOLIB_VERSION='1.14.15' IOLIB_VERSION_MAJOR='1' IOLIB_VERSION_MINOR='14' IOLIB_VERSION_PATCH='15' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='' LIBCURL='' LIBCURL_CPPFLAGS='' LIBOBJS='' LIBS='-lm -lpthread -llzma -lbz2 ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIBZ='-lz' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/usr/bin/mkdir -p' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='io_lib' PACKAGE_BUGREPORT='' PACKAGE_NAME='io_lib' PACKAGE_STRING='io_lib 1.14.15' PACKAGE_TARNAME='io_lib' PACKAGE_URL='' PACKAGE_VERSION='1.14.15' PATH_SEPARATOR=':' RANLIB='ranlib' SED='/usr/bin/sed' SET_CRAM_IO_CUSTOM_BUFFERING='#define CRAM_IO_CUSTOM_BUFFERING' SET_ENDIAN='#define SP_LITTLE_ENDIAN' SET_MAKE='' SET_STDIO_EXT='#define HAVE_STDIO_EXT_H' SHELL='/bin/sh' STRIP='strip' VERSION='1.14.15' VERS_AGE='1' VERS_CURRENT='15' VERS_REVISION='2' _libcurl_config='' ac_ct_AR='ar' ac_ct_CC='/usr/bin/cc' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/install' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='${localstatedir}/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs_extra=' htscodecs' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "io_lib" #define PACKAGE_TARNAME "io_lib" #define PACKAGE_VERSION "1.14.15" #define PACKAGE_STRING "io_lib 1.14.15" #define PACKAGE_BUGREPORT "" #define PACKAGE_URL "" #define PACKAGE "io_lib" #define VERSION "1.14.15" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_ZLIB 1 #define HAVE_LIBBZ2 1 #define HAVE_LIBLZMA 1 #define HAVE_VA_COPY 1 #define STDC_HEADERS 1 #define HAVE_SYS_WAIT_H 1 #define HAVE_FCNTL_H 1 #define HAVE_LIMITS_H 1 #define HAVE_UNISTD_H 1 #define HAVE_MALLOC_H 1 #define SIZEOF_SHORT 2 #define SIZEOF_INT 4 #define SIZEOF_LONG 8 #define IOLIB_CRC 1 #define HAVE_FILENO 1 #define HAVE_FSTAT 1 #define HAVE_MALLOPT 1 #define HAVE_FSEEKO 1 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRDUP 1 #define HAVE_FSYNC 1 configure: exit 0