This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by htscodecs configure 1.3.0, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix=/home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/install --disable-option-checking --enable-shared=no --without-libcurl LDFLAGS= CFLAGS= CC=/usr/bin/cc CXX=/usr/bin/c++ --disable-shared --with-pic --srcdir=. --cache-file=/dev/null ## --------- ## ## Platform. ## ## --------- ## hostname = venus.cc.umanitoba.ca uname -m = x86_64 uname -r = 4.18.0-477.21.1.el8_8.x86_64 uname -s = Linux uname -v = #1 SMP Thu Jul 20 08:38:27 EDT 2023 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/psgendb/BIRCHDEV/local/script PATH: /home/psgendb/BIRCHDEV/local/bin-linux-x86_64 PATH: /usr/share/Modules/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /opt/thinlinc/bin PATH: /usr/bin/X11 PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /home/psgendb/BIRCHDEV/script PATH: /home/psgendb/BIRCHDEV/bin-linux-x86_64 PATH: /home/psgendb/BIRCHDEV/local/pkg/EMBOSS/linux-x86_64/bin PATH: /home/psgendb/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2305: checking for a BSD-compatible install configure:2373: result: /usr/bin/install -c configure:2384: checking whether build environment is sane configure:2439: result: yes configure:2590: checking for a thread-safe mkdir -p configure:2629: result: /usr/bin/mkdir -p configure:2636: checking for gawk configure:2652: found /usr/bin/gawk configure:2663: result: gawk configure:2674: checking whether make sets $(MAKE) configure:2696: result: yes configure:2725: checking whether make supports nested variables configure:2742: result: yes configure:2869: checking whether to enable maintainer-specific portions of Makefiles configure:2878: result: no configure:2997: checking for gcc configure:3024: result: /usr/bin/cc configure:3253: checking for C compiler version configure:3262: /usr/bin/cc --version >&5 cc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-18) Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3273: $? = 0 configure:3262: /usr/bin/cc -v >&5 Using built-in specs. COLLECT_GCC=/usr/bin/cc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-18) (GCC) configure:3273: $? = 0 configure:3262: /usr/bin/cc -V >&5 cc: error: unrecognized command line option '-V' cc: fatal error: no input files compilation terminated. configure:3273: $? = 1 configure:3262: /usr/bin/cc -qversion >&5 cc: error: unrecognized command line option '-qversion'; did you mean '--version'? cc: fatal error: no input files compilation terminated. configure:3273: $? = 1 configure:3293: checking whether the C compiler works configure:3315: /usr/bin/cc conftest.c >&5 configure:3319: $? = 0 configure:3367: result: yes configure:3370: checking for C compiler default output file name configure:3372: result: a.out configure:3378: checking for suffix of executables configure:3385: /usr/bin/cc -o conftest conftest.c >&5 configure:3389: $? = 0 configure:3411: result: configure:3433: checking whether we are cross compiling configure:3441: /usr/bin/cc -o conftest conftest.c >&5 configure:3445: $? = 0 configure:3452: ./conftest configure:3456: $? = 0 configure:3471: result: no configure:3476: checking for suffix of object files configure:3498: /usr/bin/cc -c conftest.c >&5 configure:3502: $? = 0 configure:3523: result: o configure:3527: checking whether we are using the GNU C compiler configure:3546: /usr/bin/cc -c conftest.c >&5 configure:3546: $? = 0 configure:3555: result: yes configure:3564: checking whether /usr/bin/cc accepts -g configure:3584: /usr/bin/cc -c -g conftest.c >&5 configure:3584: $? = 0 configure:3625: result: yes configure:3642: checking for /usr/bin/cc option to accept ISO C89 configure:3705: /usr/bin/cc -c conftest.c >&5 configure:3705: $? = 0 configure:3718: result: none needed configure:3743: checking whether /usr/bin/cc understands -c and -o together configure:3765: /usr/bin/cc -c conftest.c -o conftest2.o configure:3768: $? = 0 configure:3765: /usr/bin/cc -c conftest.c -o conftest2.o configure:3768: $? = 0 configure:3780: result: yes configure:3808: checking for style of include used by make configure:3836: result: GNU configure:3862: checking dependency style of /usr/bin/cc configure:3973: result: gcc3 configure:4018: checking build system type configure:4032: result: x86_64-pc-linux-gnu configure:4052: checking host system type configure:4065: result: x86_64-pc-linux-gnu configure:4106: checking how to print strings configure:4133: result: printf configure:4154: checking for a sed that does not truncate output configure:4218: result: /usr/bin/sed configure:4236: checking for grep that handles long lines and -e configure:4294: result: /usr/bin/grep configure:4299: checking for egrep configure:4361: result: /usr/bin/grep -E configure:4366: checking for fgrep configure:4428: result: /usr/bin/grep -F configure:4463: checking for ld used by /usr/bin/cc configure:4530: result: /usr/bin/ld configure:4537: checking if the linker (/usr/bin/ld) is GNU ld configure:4552: result: yes configure:4564: checking for BSD- or MS-compatible name lister (nm) configure:4618: result: /usr/bin/nm -B configure:4748: checking the name lister (/usr/bin/nm -B) interface configure:4755: /usr/bin/cc -c conftest.c >&5 configure:4758: /usr/bin/nm -B "conftest.o" configure:4761: output 0000000000000000 B some_variable configure:4768: result: BSD nm configure:4771: checking whether ln -s works configure:4775: result: yes configure:4783: checking the maximum length of command line arguments configure:4914: result: 1572864 configure:4962: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:5002: result: func_convert_file_noop configure:5009: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:5029: result: func_convert_file_noop configure:5036: checking for /usr/bin/ld option to reload object files configure:5043: result: -r configure:5117: checking for objdump configure:5133: found /usr/bin/objdump configure:5144: result: objdump configure:5176: checking how to recognize dependent libraries configure:5376: result: pass_all configure:5461: checking for dlltool configure:5491: result: no configure:5521: checking how to associate runtime and link libraries configure:5548: result: printf %s\n configure:5609: checking for ar configure:5625: found /usr/bin/ar configure:5636: result: ar configure:5673: checking for archiver @FILE support configure:5690: /usr/bin/cc -c conftest.c >&5 configure:5690: $? = 0 configure:5693: ar cru libconftest.a @conftest.lst >&5 configure:5696: $? = 0 configure:5701: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:5704: $? = 1 configure:5716: result: @ configure:5774: checking for strip configure:5790: found /usr/bin/strip configure:5801: result: strip configure:5873: checking for ranlib configure:5889: found /usr/bin/ranlib configure:5900: result: ranlib configure:6002: checking command to parse /usr/bin/nm -B output from /usr/bin/cc object configure:6155: /usr/bin/cc -c conftest.c >&5 configure:6158: $? = 0 configure:6162: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6165: $? = 0 configure:6231: /usr/bin/cc -o conftest conftest.c conftstm.o >&5 configure:6234: $? = 0 configure:6272: result: ok configure:6319: checking for sysroot configure:6349: result: no configure:6356: checking for a working dd configure:6394: result: /usr/bin/dd configure:6398: checking how to truncate binary pipes configure:6413: result: /usr/bin/dd bs=4096 count=1 configure:6549: /usr/bin/cc -c conftest.c >&5 configure:6552: $? = 0 configure:6742: checking for mt configure:6772: result: no configure:6792: checking if : is a manifest tool configure:6798: : '-?' configure:6806: result: no configure:7483: checking how to run the C preprocessor configure:7514: /usr/bin/cc -E conftest.c configure:7514: $? = 0 configure:7528: /usr/bin/cc -E conftest.c conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:7528: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "htscodecs" | #define PACKAGE_TARNAME "htscodecs" | #define PACKAGE_VERSION "1.3.0" | #define PACKAGE_STRING "htscodecs 1.3.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "htscodecs" | #define VERSION "1.3.0" | /* end confdefs.h. */ | #include configure:7553: result: /usr/bin/cc -E configure:7573: /usr/bin/cc -E conftest.c configure:7573: $? = 0 configure:7587: /usr/bin/cc -E conftest.c conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:7587: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "htscodecs" | #define PACKAGE_TARNAME "htscodecs" | #define PACKAGE_VERSION "1.3.0" | #define PACKAGE_STRING "htscodecs 1.3.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "htscodecs" | #define VERSION "1.3.0" | /* end confdefs.h. */ | #include configure:7616: checking for ANSI C header files configure:7636: /usr/bin/cc -c conftest.c >&5 configure:7636: $? = 0 configure:7709: /usr/bin/cc -o conftest conftest.c >&5 configure:7709: $? = 0 configure:7709: ./conftest configure:7709: $? = 0 configure:7720: result: yes configure:7733: checking for sys/types.h configure:7733: /usr/bin/cc -c conftest.c >&5 configure:7733: $? = 0 configure:7733: result: yes configure:7733: checking for sys/stat.h configure:7733: /usr/bin/cc -c conftest.c >&5 configure:7733: $? = 0 configure:7733: result: yes configure:7733: checking for stdlib.h configure:7733: /usr/bin/cc -c conftest.c >&5 configure:7733: $? = 0 configure:7733: result: yes configure:7733: checking for string.h configure:7733: /usr/bin/cc -c conftest.c >&5 configure:7733: $? = 0 configure:7733: result: yes configure:7733: checking for memory.h configure:7733: /usr/bin/cc -c conftest.c >&5 configure:7733: $? = 0 configure:7733: result: yes configure:7733: checking for strings.h configure:7733: /usr/bin/cc -c conftest.c >&5 configure:7733: $? = 0 configure:7733: result: yes configure:7733: checking for inttypes.h configure:7733: /usr/bin/cc -c conftest.c >&5 configure:7733: $? = 0 configure:7733: result: yes configure:7733: checking for stdint.h configure:7733: /usr/bin/cc -c conftest.c >&5 configure:7733: $? = 0 configure:7733: result: yes configure:7733: checking for unistd.h configure:7733: /usr/bin/cc -c conftest.c >&5 configure:7733: $? = 0 configure:7733: result: yes configure:7747: checking for dlfcn.h configure:7747: /usr/bin/cc -c conftest.c >&5 configure:7747: $? = 0 configure:7747: result: yes configure:8003: checking for objdir configure:8018: result: .libs configure:8282: checking if /usr/bin/cc supports -fno-rtti -fno-exceptions configure:8300: /usr/bin/cc -c -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C configure:8304: $? = 0 configure:8317: result: no configure:8675: checking for /usr/bin/cc option to produce PIC configure:8682: result: -fPIC -DPIC configure:8690: checking if /usr/bin/cc PIC flag -fPIC -DPIC works configure:8708: /usr/bin/cc -c -fPIC -DPIC -DPIC conftest.c >&5 configure:8712: $? = 0 configure:8725: result: yes configure:8754: checking if /usr/bin/cc static flag -static works configure:8782: result: no configure:8797: checking if /usr/bin/cc supports -c -o file.o configure:8818: /usr/bin/cc -c -o out/conftest2.o conftest.c >&5 configure:8822: $? = 0 configure:8844: result: yes configure:8852: checking if /usr/bin/cc supports -c -o file.o configure:8899: result: yes configure:8932: checking whether the /usr/bin/cc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10195: result: yes configure:10435: checking dynamic linker characteristics configure:11016: /usr/bin/cc -o conftest -Wl,-rpath -Wl,/foo conftest.c >&5 configure:11016: $? = 0 configure:11265: result: GNU/Linux ld.so configure:11387: checking how to hardcode library paths into programs configure:11412: result: immediate configure:11960: checking whether stripping libraries is possible configure:11965: result: yes configure:12000: checking if libtool supports shared libraries configure:12002: result: yes configure:12005: checking whether to build shared libraries configure:12030: result: no configure:12033: checking whether to build static libraries configure:12037: result: yes configure:12100: checking for grep that handles long lines and -e configure:12158: result: /usr/bin/grep configure:12171: checking for C compiler warning flags configure:12269: result: -Wall configure:12375: checking for inflateEnd in -lz configure:12400: /usr/bin/cc -o conftest -Wall conftest.c -lz >&5 configure:12400: $? = 0 configure:12409: result: yes configure:12412: checking zlib.h usability configure:12412: /usr/bin/cc -c -Wall conftest.c >&5 configure:12412: $? = 0 configure:12412: result: yes configure:12412: checking zlib.h presence configure:12412: /usr/bin/cc -E conftest.c configure:12412: $? = 0 configure:12412: result: yes configure:12412: checking for zlib.h configure:12412: result: yes configure:12453: checking for BZ2_bzBuffToBuffCompress in -lbz2 configure:12478: /usr/bin/cc -o conftest -Wall conftest.c -lbz2 >&5 configure:12478: $? = 0 configure:12487: result: yes configure:12501: checking whether C compiler accepts -mssse3 configure:12527: /usr/bin/cc -o conftest -Wall -mssse3 conftest.c -lbz2 >&5 configure:12527: $? = 0 configure:12536: result: yes configure:12552: checking whether C compiler accepts -mpopcnt configure:12577: /usr/bin/cc -o conftest -Wall -mpopcnt conftest.c -lbz2 >&5 configure:12577: $? = 0 configure:12586: result: yes configure:12602: checking whether C compiler accepts -msse4.1 configure:12628: /usr/bin/cc -o conftest -Wall -msse4.1 conftest.c -lbz2 >&5 configure:12628: $? = 0 configure:12637: result: yes configure:12661: checking whether C compiler accepts -mavx2 configure:12688: /usr/bin/cc -o conftest -Wall -mavx2 conftest.c -lbz2 >&5 configure:12688: $? = 0 configure:12697: result: yes configure:12720: checking whether C compiler accepts -mavx512f configure:12746: /usr/bin/cc -o conftest -Wall -mavx512f conftest.c -lbz2 >&5 configure:12746: $? = 0 configure:12755: result: yes configure:12778: checking whether C compiler supports ARM Neon configure:12802: /usr/bin/cc -c -Wall conftest.c >&5 conftest.c:32:16: fatal error: arm_neon.h: No such file or directory #include "arm_neon.h" ^~~~~~~~~~~~ compilation terminated. configure:12802: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "htscodecs" | #define PACKAGE_TARNAME "htscodecs" | #define PACKAGE_VERSION "1.3.0" | #define PACKAGE_STRING "htscodecs 1.3.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "htscodecs" | #define VERSION "1.3.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ZLIB 1 | #define HAVE_LIBBZ2 1 | #define HAVE_SSSE3 1 | #define HAVE_POPCNT 1 | #define HAVE_SSE4_1 1 | #define HAVE_AVX2 1 | #define HAVE_AVX512 1 | /* end confdefs.h. */ | | | #include "arm_neon.h" | | int | main () | { | | int32x4_t a = vdupq_n_s32(1); | int32x4_t b = vaddq_s32(a, a); | return *((char *) &b); | | ; | return 0; | } configure:12809: result: no configure:12964: checking for sys/wait.h that is POSIX.1 compatible configure:12990: /usr/bin/cc -c -Wall conftest.c >&5 configure:12990: $? = 0 configure:12997: result: yes configure:13008: checking fcntl.h usability configure:13008: /usr/bin/cc -c -Wall conftest.c >&5 configure:13008: $? = 0 configure:13008: result: yes configure:13008: checking fcntl.h presence configure:13008: /usr/bin/cc -E conftest.c configure:13008: $? = 0 configure:13008: result: yes configure:13008: checking for fcntl.h configure:13008: result: yes configure:13008: checking limits.h usability configure:13008: /usr/bin/cc -c -Wall conftest.c >&5 configure:13008: $? = 0 configure:13008: result: yes configure:13008: checking limits.h presence configure:13008: /usr/bin/cc -E conftest.c configure:13008: $? = 0 configure:13008: result: yes configure:13008: checking for limits.h configure:13008: result: yes configure:13008: checking for unistd.h configure:13008: result: yes configure:13008: checking malloc.h usability configure:13008: /usr/bin/cc -c -Wall conftest.c >&5 configure:13008: $? = 0 configure:13008: result: yes configure:13008: checking malloc.h presence configure:13008: /usr/bin/cc -E conftest.c configure:13008: $? = 0 configure:13008: result: yes configure:13008: checking for malloc.h configure:13008: result: yes configure:13018: checking for zlib.h configure:13018: result: yes configure:13046: checking for function pthread_join configure:13059: /usr/bin/cc -o conftest -Wall conftest.c -lthr -lbz2 >&5 /usr/bin/ld: cannot find -lthr collect2: error: ld returned 1 exit status configure:13059: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "htscodecs" | #define PACKAGE_TARNAME "htscodecs" | #define PACKAGE_VERSION "1.3.0" | #define PACKAGE_STRING "htscodecs 1.3.0" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "htscodecs" | #define VERSION "1.3.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ZLIB 1 | #define HAVE_LIBBZ2 1 | #define HAVE_SSSE3 1 | #define HAVE_POPCNT 1 | #define HAVE_SSE4_1 1 | #define HAVE_AVX2 1 | #define HAVE_AVX512 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pthread_join (); | int | main () | { | return pthread_join (); | ; | return 0; | } configure:13059: /usr/bin/cc -o conftest -Wall conftest.c -lpthread -lbz2 >&5 configure:13059: $? = 0 configure:13068: result: -lpthread configure:13192: checking that generated files are newer than configure configure:13198: result: done configure:13249: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by htscodecs config.status 1.3.0, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on venus.cc.umanitoba.ca config.status:1123: creating Makefile config.status:1123: creating htscodecs/Makefile config.status:1123: creating tests/Makefile config.status:1123: creating config.h config.status:1352: executing depfiles commands config.status:1352: executing libtool commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_env_CC_set=set ac_cv_env_CC_value=/usr/bin/cc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_header_dlfcn_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_limits_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_sys_wait_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_lib_bz2_BZ2_bzBuffToBuffCompress=yes ac_cv_lib_z_inflateEnd=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/usr/bin/dd ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='/usr/bin/cc -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=/usr/bin/cc ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_make_make_set=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_check_cflags___mavx2=yes ax_cv_check_cflags___mavx512f=yes ax_cv_check_cflags___mpopcnt=yes ax_cv_check_cflags___msse4_1=yes ax_cv_check_cflags___mssse3=yes htscodecs_cv_have_neon=no lt_cv_ar_at_file=@ lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_gnu_ld=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/usr/bin/dd bs=4096 count=1' vl_cv_prog_cc_warnings=-Wall ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing aclocal-1.15' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AUTOCONF='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing autoconf' AUTOHEADER='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing autoheader' AUTOMAKE='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing automake-1.15' AWK='gawk' CC='/usr/bin/cc' CCDEPMODE='depmode=gcc3' CFLAGS='-Wall ' CPP='/usr/bin/cc -E' CPPFLAGS='' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' EXEEXT='' FGREP='/usr/bin/grep -F' GREP='/usr/bin/grep' HAVE_LIBDEFLATE_FALSE='' HAVE_LIBDEFLATE_TRUE='#' HAVE_ZLIB_FALSE='#' HAVE_ZLIB_TRUE='' HTSCODECS_SIMD_SRC='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='' LIBOBJS='' LIBS='-lpthread -lbz2 ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIBZ='-lz' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing makeinfo' MANIFEST_TOOL=':' MAVX2='-mavx2' MAVX512='-mavx512f' MKDIR_P='/usr/bin/mkdir -p' MPOPCNT='-mpopcnt' MSSE4_1='-msse4.1' MSSSE3='-mssse3' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='htscodecs' PACKAGE_BUGREPORT='' PACKAGE_NAME='htscodecs' PACKAGE_STRING='htscodecs 1.3.0' PACKAGE_TARNAME='htscodecs' PACKAGE_URL='' PACKAGE_VERSION='1.3.0' PATH_SEPARATOR=':' RANLIB='ranlib' RANS_32x16_AVX2_FALSE='#' RANS_32x16_AVX2_TRUE='' RANS_32x16_AVX512_FALSE='#' RANS_32x16_AVX512_TRUE='' RANS_32x16_NEON_FALSE='' RANS_32x16_NEON_TRUE='#' RANS_32x16_SSE4_FALSE='#' RANS_32x16_SSE4_TRUE='' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' VERSION='1.3.0' VERS_AGE='1' VERS_CURRENT='3' VERS_REVISION='0' ac_ct_AR='ar' ac_ct_CC='/usr/bin/cc' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/install' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='${localstatedir}/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "htscodecs" #define PACKAGE_TARNAME "htscodecs" #define PACKAGE_VERSION "1.3.0" #define PACKAGE_STRING "htscodecs 1.3.0" #define PACKAGE_BUGREPORT "" #define PACKAGE_URL "" #define PACKAGE "htscodecs" #define VERSION "1.3.0" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_ZLIB 1 #define HAVE_LIBBZ2 1 #define HAVE_SSSE3 1 #define HAVE_POPCNT 1 #define HAVE_SSE4_1 1 #define HAVE_AVX2 1 #define HAVE_AVX512 1 #define HAVE_SYS_WAIT_H 1 #define HAVE_FCNTL_H 1 #define HAVE_LIMITS_H 1 #define HAVE_UNISTD_H 1 #define HAVE_MALLOC_H 1 configure: exit 0