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# Copyright (c) 2003, 2005-2007, 2009-2010, 2013 Genome Research Ltd.
# Author(s): James Bonfield
# 
# Redistribution and use in source and binary forms, with or without 
# modification, are permitted provided that the following conditions are met:
# 
#    1. Redistributions of source code must retain the above copyright notice,
#       this list of conditions and the following disclaimer.
# 
#    2. Redistributions in binary form must reproduce the above
#       copyright notice, this list of conditions and the following
#       disclaimer in the documentation and/or other materials provided
#       with the distribution.
# 
#    3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
#    Institute nor the names of its contributors may be used to endorse
#    or promote products derived from this software without specific
#    prior written permission.
# 
# THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS
# IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
# TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
# PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH
# LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# 
lib_LTLIBRARIES = libstaden-read.la
libstaden_read_la_SOURCES = \
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	scf_extras.c \
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	translate.c \
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	compression.c \
	compression.h \
	ztr.c \
	ztr.h \
	ztr_translate.c \
	deflate_interlaced.c \
	deflate_interlaced.h \
	abi.h \
	fpoint.c \
	fpoint.h \
	seqIOABI.c \
	seqIOABI.h \
	seqIOALF.c \
	alf.h \
	expFileIO.c \
	expFileIO.h \
	plain.h \
	seqIOPlain.c \
	misc_scf.c \
	read_scf.c \
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	write_scf.c \
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	read_alloc.c \
	strings.c \
	tar_format.h \
	traceType.c \
	traceType.h \
	xalloc.c \
	xalloc.h \
	vlen.c \
	vlen.h \
	hash_table.c \
	hash_table.h \
	jenkins_lookup3.c \
	jenkins_lookup3.h \
	mFILE.c \
	mFILE.h \
	stdio_hack.h \
	pooled_alloc.c \
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	crc32.c \
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	scram.c \
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	binning.h \
	binning.c \
	cram_bambam.c \
	bgzip.c \
	bgzip.h \
	cram_block_compression.h \
	version.h

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libstaden_read_la_LDFLAGS = -version-info @VERS_CURRENT@:@VERS_REVISION@:@VERS_AGE@ 
libstaden_read_la_LIBADD = @LIBZ@ @LIBCURL@ ${top_builddir}/htscodecs/htscodecs/libhtscodecs.la
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libstaden_read_la-seqIOABI.lo: seqIOABI.c
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libstaden_read_la-seqIOALF.lo: seqIOALF.c
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libstaden_read_la-expFileIO.lo: expFileIO.c
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libstaden_read_la-seqIOPlain.lo: seqIOPlain.c
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libstaden_read_la-misc_scf.lo: misc_scf.c
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libstaden_read_la-read_scf.lo: read_scf.c
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libstaden_read_la-write_scf.lo: write_scf.c
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libstaden_read_la-sff.lo: sff.c
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libstaden_read_la-srf.lo: srf.c
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libstaden_read_la-array.lo: array.c
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libstaden_read_la-compress.lo: compress.c
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libstaden_read_la-error.lo: error.c
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libstaden_read_la-files.lo: files.c
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libstaden_read_la-find.lo: find.c
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libstaden_read_la-mach-io.lo: mach-io.c
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libstaden_read_la-open_trace_file.lo: open_trace_file.c
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libstaden_read_la-read_alloc.lo: read_alloc.c
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libstaden_read_la-strings.lo: strings.c
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libstaden_read_la-xalloc.lo: xalloc.c
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libstaden_read_la-vlen.lo: vlen.c
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libstaden_read_la-hash_table.lo: hash_table.c
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libstaden_read_la-jenkins_lookup3.lo: jenkins_lookup3.c
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libstaden_read_la-mFILE.lo: mFILE.c
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libstaden_read_la-pooled_alloc.lo: pooled_alloc.c
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libstaden_read_la-bam.lo: bam.c
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libstaden_read_la-sam_header.lo: sam_header.c
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libstaden_read_la-cram_codecs.lo: cram_codecs.c
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libstaden_read_la-cram_encode.lo: cram_encode.c
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libstaden_read_la-cram_decode.lo: cram_decode.c
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libstaden_read_la-cram_stats.lo: cram_stats.c
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libstaden_read_la-cram_io.lo: cram_io.c
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libstaden_read_la-cram_index.lo: cram_index.c
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