/* * Copyright (c) 2007, 2010 Genome Research Ltd. * Author(s): James Bonfield * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * 1. Redistributions of source code must retain the above copyright notice, * this list of conditions and the following disclaimer. * * 2. Redistributions in binary form must reproduce the above * copyright notice, this list of conditions and the following * disclaimer in the documentation and/or other materials provided * with the distribution. * * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger * Institute nor the names of its contributors may be used to endorse * or promote products derived from this software without specific * prior written permission. * * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS * IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ /* * Author(s): James Bonfield, John Taylor * * Copyright (c) 1996, 1999-2000 MEDICAL RESEARCH COUNCIL * All rights reserved * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * 1 Redistributions of source code must retain the above copyright notice, * this list of conditions and the following disclaimer. * * 2 Redistributions in binary form must reproduce the above copyright * notice, this list of conditions and the following disclaimer in * the documentation and/or other materials provided with the * distribution. * * 3 Neither the name of the MEDICAL RESEARCH COUNCIL, THE LABORATORY OF * MOLECULAR BIOLOGY nor the names of its contributors may be used * to endorse or promote products derived from this software without * specific prior written permission. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE * POSSIBILITY OF SUCH DAMAGE. */ /* * Copyright (c) Medical Research Council 1994. All rights reserved. * * Permission to use, copy, modify and distribute this software and its * documentation for any purpose is hereby granted without fee, provided that * this copyright and notice appears in all copies. * * This file was written by James Bonfield, Simon Dear, Rodger Staden, * as part of the Staden Package at the MRC Laboratory of Molecular * Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom. * * MRC disclaims all warranties with regard to this software. */ #ifdef HAVE_CONFIG_H #include "io_lib_config.h" #endif #include "io_lib/misc.h" #include #include #include /* 19/3/99 johnt - added Corba support */ #ifdef USE_CORBA #include "stcorba.h" #endif #ifdef USE_BIOLIMS #include "spBiolims.h" #endif char *myfind(char *file, char* searchpath, int (*found) (char *) ) { static char wholePath[1024]; char *path; char *f; f = NULL; if (found(file)) { strcpy(wholePath,file); f = wholePath; } else if (searchpath != NULL) { char *paths; char *next; paths = (char *) malloc(strlen(searchpath)+1); strcpy(paths,searchpath); path = paths; next = strchr(path,':'); while( next && (*(next+1) == ':' )){ /* 26/03/99 johnt - allow : to be entered into path by using :: */ memmove(next,next+1,strlen(next+1)+1); /* shuffle up data [including \0]*/ next = strchr(next+1,':'); } if(next) *next = '\0'; while (path!= NULL) { #ifdef USE_CORBA /* 19/03/99 johnt - if it is a corba path - look there */ if( !strncmp( CORBATAG,path,strlen(CORBATAG))){ if(corba_found(wholePath,path+strlen(CORBATAG),file)){ f = wholePath; break; } } else #endif #ifdef USE_BIOLIMS if( !strncmp( BIOLIMS_TAG,path,strlen(BIOLIMS_TAG))){ if(biolims_found(wholePath,path+strlen(BIOLIMS_TAG),file)){ f = wholePath; break; } } else #endif { (void) strcpy(wholePath,path); (void) strcat(wholePath,"/"); (void) strcat(wholePath,file); if (found(wholePath)) { f = wholePath; break; } } path = next; if( path ){ path++; next = strchr(path,':'); while( next && (*(next+1) == ':' )){ /* 26/03/99 johnt - allow : to be entered into path by using :: */ memmove(next,next+1,strlen(next+1)+1); /* shuffle up data */ next = strchr(next+1,':'); } if(next) *next='\0'; } } free(paths); } return f; }