/* * Copyright (c) 2005, 2007 Genome Research Ltd. * Author(s): James Bonfield * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * 1. Redistributions of source code must retain the above copyright notice, * this list of conditions and the following disclaimer. * * 2. Redistributions in binary form must reproduce the above * copyright notice, this list of conditions and the following * disclaimer in the documentation and/or other materials provided * with the distribution. * * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger * Institute nor the names of its contributors may be used to endorse * or promote products derived from this software without specific * prior written permission. * * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS * IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ #ifndef _STDIO_HACK_H_ #define _STDIO_HACK_H_ #include #include "io_lib/mFILE.h" #ifdef __cplusplus extern "C" { #endif /* * This file will define many of the stdio functions to use the * in-memory versions here. These are sufficient to allow the abi, * scf, etc reading code (but not writing) to transparently operate by * loading the entire file into memory and then doing in-memory * manipulation instead of on-disk manipulation. * * The key use for this though is to allow generation of fake FILE pointers * so that reading from tar files does not requiring writing to disk and * reading back again. */ #define FILE mFILE #define fopen mfopen #define fclose mfclose #define fseek mfseek #define ftell mftell #define rewind mrewind #ifdef feof # undef feof #endif #define feof mfeof #define fread mfread #define fwrite mfwrite #define fgetc mfgetc #define ungetc mungetc #define fgets mfgets #define fflush mfflush #define fprintf mfprintf #ifdef stdin # undef stdin # undef stdout # undef stderr #endif #define stdin mstdin() #define stdout mstdout() #define stderr mstderr() #define fread_abi mfread_abi #define fwrite_abi mfwrite_abi #define fread_alf mfread_alf #define fwrite_alf mfwrite_alf #define fread_pln mfread_pln #define fwrite_pln mfwrite_pln #define fread_scf mfread_scf #define fwrite_scf mfwrite_scf #define fread_ztr mfread_ztr #define fwrite_ztr mfwrite_ztr #define exp_fread_info exp_mfread_info #define exp_print_file exp_print_mfile #define open_trace_file open_trace_mfile #define fread_reading mfread_reading #define fwrite_reading mfwrite_reading #ifdef __cplusplus } #endif #endif /* _STDIO_HACK_H_ */