# Makefile.in generated by automake 1.15.1 from Makefile.am. # progs/Makefile. Generated from Makefile.in by configure. # Copyright (C) 1994-2017 Free Software Foundation, Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY, to the extent permitted by law; without # even the implied warranty of MERCHANTABILITY or FITNESS FOR A # PARTICULAR PURPOSE. am__is_gnu_make = { \ if test -z '$(MAKELEVEL)'; then \ false; \ elif test -n '$(MAKE_HOST)'; then \ true; \ elif test -n '$(MAKE_VERSION)' && test -n '$(CURDIR)'; then \ true; \ else \ false; \ fi; \ } am__make_running_with_option = \ case $${target_option-} in \ ?) ;; \ *) echo "am__make_running_with_option: internal error: invalid" \ "target option '$${target_option-}' specified" >&2; \ exit 1;; \ esac; \ has_opt=no; \ sane_makeflags=$$MAKEFLAGS; \ if $(am__is_gnu_make); then \ sane_makeflags=$$MFLAGS; \ else \ case $$MAKEFLAGS in \ *\\[\ \ ]*) \ bs=\\; \ sane_makeflags=`printf '%s\n' "$$MAKEFLAGS" \ | sed "s/$$bs$$bs[$$bs $$bs ]*//g"`;; \ esac; \ fi; \ skip_next=no; \ strip_trailopt () \ { \ flg=`printf '%s\n' "$$flg" | sed "s/$$1.*$$//"`; \ }; \ for flg in $$sane_makeflags; do \ test $$skip_next = yes && { skip_next=no; continue; }; \ case $$flg in \ *=*|--*) continue;; \ -*I) strip_trailopt 'I'; skip_next=yes;; \ -*I?*) strip_trailopt 'I';; \ -*O) strip_trailopt 'O'; skip_next=yes;; \ -*O?*) strip_trailopt 'O';; \ -*l) strip_trailopt 'l'; skip_next=yes;; \ -*l?*) strip_trailopt 'l';; \ -[dEDm]) skip_next=yes;; \ -[JT]) skip_next=yes;; \ esac; \ case $$flg in \ *$$target_option*) has_opt=yes; break;; \ esac; \ done; \ test $$has_opt = yes am__make_dryrun = (target_option=n; $(am__make_running_with_option)) am__make_keepgoing = (target_option=k; $(am__make_running_with_option)) pkgdatadir = $(datadir)/io_lib pkgincludedir = $(includedir)/io_lib pkglibdir = $(libdir)/io_lib pkglibexecdir = $(libexecdir)/io_lib am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c install_sh_SCRIPT = $(install_sh) -c INSTALL_HEADER = $(INSTALL_DATA) transform = $(program_transform_name) NORMAL_INSTALL = : PRE_INSTALL = : POST_INSTALL = : NORMAL_UNINSTALL = : PRE_UNINSTALL = : POST_UNINSTALL = : build_triplet = x86_64-pc-linux-gnu host_triplet = x86_64-pc-linux-gnu bin_PROGRAMS = convert_trace$(EXEEXT) makeSCF$(EXEEXT) \ extract_seq$(EXEEXT) extract_qual$(EXEEXT) \ extract_fastq$(EXEEXT) index_tar$(EXEEXT) scf_dump$(EXEEXT) \ scf_info$(EXEEXT) scf_update$(EXEEXT) get_comment$(EXEEXT) \ hash_tar$(EXEEXT) hash_extract$(EXEEXT) hash_list$(EXEEXT) \ trace_dump$(EXEEXT) hash_sff$(EXEEXT) append_sff$(EXEEXT) \ ztr_dump$(EXEEXT) srf_dump_all$(EXEEXT) \ srf_index_hash$(EXEEXT) srf_extract_linear$(EXEEXT) \ srf_extract_hash$(EXEEXT) srf2fastq$(EXEEXT) \ srf2fasta$(EXEEXT) srf_filter$(EXEEXT) srf_info$(EXEEXT) \ srf_list$(EXEEXT) hash_exp$(EXEEXT) cram_dump$(EXEEXT) \ cram_index$(EXEEXT) scramble$(EXEEXT) scram_merge$(EXEEXT) \ scram_pileup$(EXEEXT) scram_flagstat$(EXEEXT) \ scram_test$(EXEEXT) cram_size$(EXEEXT) cram_filter$(EXEEXT) subdir = progs ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/ax_subdirs_configure.m4 \ $(top_srcdir)/m4/ax_with_libdeflate.m4 \ $(top_srcdir)/m4/ax_with_zstd.m4 $(top_srcdir)/m4/libtool.m4 \ $(top_srcdir)/m4/ltoptions.m4 $(top_srcdir)/m4/ltsugar.m4 \ $(top_srcdir)/m4/ltversion.m4 $(top_srcdir)/m4/lt~obsolete.m4 \ $(top_srcdir)/acinclude.m4 $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON) mkinstalldirs = $(install_sh) -d CONFIG_HEADER = $(top_builddir)/io_lib_config.h CONFIG_CLEAN_FILES = CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" PROGRAMS = $(bin_PROGRAMS) am_append_sff_OBJECTS = append_sff.$(OBJEXT) append_sff_OBJECTS = $(am_append_sff_OBJECTS) append_sff_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la AM_V_lt = $(am__v_lt_$(V)) am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) am__v_lt_0 = --silent am__v_lt_1 = am_convert_trace_OBJECTS = convert_trace.$(OBJEXT) convert_trace_OBJECTS = $(am_convert_trace_OBJECTS) convert_trace_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_cram_dump_OBJECTS = cram_dump.$(OBJEXT) cram_dump_OBJECTS = $(am_cram_dump_OBJECTS) cram_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_cram_filter_OBJECTS = cram_filter.$(OBJEXT) cram_filter_OBJECTS = $(am_cram_filter_OBJECTS) cram_filter_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_cram_index_OBJECTS = cram_index.$(OBJEXT) cram_index_OBJECTS = $(am_cram_index_OBJECTS) cram_index_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_cram_size_OBJECTS = cram_size.$(OBJEXT) cram_size_OBJECTS = $(am_cram_size_OBJECTS) cram_size_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_extract_fastq_OBJECTS = extract_fastq.$(OBJEXT) extract_fastq_OBJECTS = $(am_extract_fastq_OBJECTS) extract_fastq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_extract_qual_OBJECTS = extract_qual.$(OBJEXT) extract_qual_OBJECTS = $(am_extract_qual_OBJECTS) extract_qual_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_extract_seq_OBJECTS = extract_seq.$(OBJEXT) extract_seq_OBJECTS = $(am_extract_seq_OBJECTS) extract_seq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_get_comment_OBJECTS = get_comment.$(OBJEXT) get_comment_OBJECTS = $(am_get_comment_OBJECTS) get_comment_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_hash_exp_OBJECTS = hash_exp.$(OBJEXT) hash_exp_OBJECTS = $(am_hash_exp_OBJECTS) hash_exp_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_hash_extract_OBJECTS = hash_extract.$(OBJEXT) hash_extract_OBJECTS = $(am_hash_extract_OBJECTS) hash_extract_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_hash_list_OBJECTS = hash_list.$(OBJEXT) hash_list_OBJECTS = $(am_hash_list_OBJECTS) hash_list_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_hash_sff_OBJECTS = hash_sff.$(OBJEXT) hash_sff_OBJECTS = $(am_hash_sff_OBJECTS) hash_sff_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_hash_tar_OBJECTS = hash_tar.$(OBJEXT) hash_tar_OBJECTS = $(am_hash_tar_OBJECTS) hash_tar_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_index_tar_OBJECTS = index_tar.$(OBJEXT) index_tar_OBJECTS = $(am_index_tar_OBJECTS) index_tar_LDADD = $(LDADD) am_makeSCF_OBJECTS = makeSCF.$(OBJEXT) makeSCF_OBJECTS = $(am_makeSCF_OBJECTS) makeSCF_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_scf_dump_OBJECTS = scf_dump.$(OBJEXT) scf_dump_OBJECTS = $(am_scf_dump_OBJECTS) scf_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_scf_info_OBJECTS = scf_info.$(OBJEXT) scf_info_OBJECTS = $(am_scf_info_OBJECTS) scf_info_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_scf_update_OBJECTS = scf_update.$(OBJEXT) scf_update_OBJECTS = $(am_scf_update_OBJECTS) scf_update_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_scram_flagstat_OBJECTS = scram_flagstat.$(OBJEXT) scram_flagstat_OBJECTS = $(am_scram_flagstat_OBJECTS) scram_flagstat_DEPENDENCIES = \ $(top_builddir)/io_lib/libstaden-read.la am_scram_merge_OBJECTS = scram_merge.$(OBJEXT) scram_merge_OBJECTS = $(am_scram_merge_OBJECTS) scram_merge_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_scram_pileup_OBJECTS = scram_pileup.$(OBJEXT) scram_pileup_OBJECTS = $(am_scram_pileup_OBJECTS) scram_pileup_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_scram_test_OBJECTS = scram_test.$(OBJEXT) scram_test_OBJECTS = $(am_scram_test_OBJECTS) scram_test_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_scramble_OBJECTS = scramble.$(OBJEXT) scramble_OBJECTS = $(am_scramble_OBJECTS) scramble_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf2fasta_OBJECTS = srf2fasta.$(OBJEXT) srf2fasta_OBJECTS = $(am_srf2fasta_OBJECTS) srf2fasta_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf2fastq_OBJECTS = srf2fastq.$(OBJEXT) srf2fastq_OBJECTS = $(am_srf2fastq_OBJECTS) srf2fastq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf_dump_all_OBJECTS = srf_dump_all.$(OBJEXT) srf_dump_all_OBJECTS = $(am_srf_dump_all_OBJECTS) srf_dump_all_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf_extract_hash_OBJECTS = srf_extract_hash.$(OBJEXT) srf_extract_hash_OBJECTS = $(am_srf_extract_hash_OBJECTS) srf_extract_hash_DEPENDENCIES = \ $(top_builddir)/io_lib/libstaden-read.la am_srf_extract_linear_OBJECTS = srf_extract_linear.$(OBJEXT) srf_extract_linear_OBJECTS = $(am_srf_extract_linear_OBJECTS) srf_extract_linear_DEPENDENCIES = \ $(top_builddir)/io_lib/libstaden-read.la am_srf_filter_OBJECTS = srf_filter.$(OBJEXT) srf_filter_OBJECTS = $(am_srf_filter_OBJECTS) srf_filter_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf_index_hash_OBJECTS = srf_index_hash.$(OBJEXT) srf_index_hash_OBJECTS = $(am_srf_index_hash_OBJECTS) srf_index_hash_DEPENDENCIES = \ $(top_builddir)/io_lib/libstaden-read.la am_srf_info_OBJECTS = srf_info.$(OBJEXT) srf_info_OBJECTS = $(am_srf_info_OBJECTS) srf_info_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf_list_OBJECTS = srf_list.$(OBJEXT) srf_list_OBJECTS = $(am_srf_list_OBJECTS) srf_list_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_trace_dump_OBJECTS = trace_dump.$(OBJEXT) trace_dump_OBJECTS = $(am_trace_dump_OBJECTS) trace_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_ztr_dump_OBJECTS = ztr_dump.$(OBJEXT) ztr_dump_OBJECTS = $(am_ztr_dump_OBJECTS) ztr_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la AM_V_P = $(am__v_P_$(V)) am__v_P_ = $(am__v_P_$(AM_DEFAULT_VERBOSITY)) am__v_P_0 = false am__v_P_1 = : AM_V_GEN = $(am__v_GEN_$(V)) am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) am__v_GEN_0 = @echo " GEN " $@; am__v_GEN_1 = AM_V_at = $(am__v_at_$(V)) am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) am__v_at_0 = @ am__v_at_1 = DEFAULT_INCLUDES = -I. -I$(top_builddir) depcomp = $(SHELL) $(top_srcdir)/depcomp am__depfiles_maybe = depfiles am__mv = mv -f COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) AM_V_CC = $(am__v_CC_$(V)) am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) am__v_CC_0 = @echo " CC " $@; am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ AM_V_CCLD = $(am__v_CCLD_$(V)) am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) am__v_CCLD_0 = @echo " CCLD " $@; am__v_CCLD_1 = SOURCES = $(append_sff_SOURCES) $(convert_trace_SOURCES) \ $(cram_dump_SOURCES) $(cram_filter_SOURCES) \ $(cram_index_SOURCES) $(cram_size_SOURCES) \ $(extract_fastq_SOURCES) $(extract_qual_SOURCES) \ $(extract_seq_SOURCES) $(get_comment_SOURCES) \ $(hash_exp_SOURCES) $(hash_extract_SOURCES) \ $(hash_list_SOURCES) $(hash_sff_SOURCES) $(hash_tar_SOURCES) \ $(index_tar_SOURCES) $(makeSCF_SOURCES) $(scf_dump_SOURCES) \ $(scf_info_SOURCES) $(scf_update_SOURCES) \ $(scram_flagstat_SOURCES) $(scram_merge_SOURCES) \ $(scram_pileup_SOURCES) $(scram_test_SOURCES) \ $(scramble_SOURCES) $(srf2fasta_SOURCES) $(srf2fastq_SOURCES) \ $(srf_dump_all_SOURCES) $(srf_extract_hash_SOURCES) \ $(srf_extract_linear_SOURCES) $(srf_filter_SOURCES) \ $(srf_index_hash_SOURCES) $(srf_info_SOURCES) \ $(srf_list_SOURCES) $(trace_dump_SOURCES) $(ztr_dump_SOURCES) DIST_SOURCES = $(append_sff_SOURCES) $(convert_trace_SOURCES) \ $(cram_dump_SOURCES) $(cram_filter_SOURCES) \ $(cram_index_SOURCES) $(cram_size_SOURCES) \ $(extract_fastq_SOURCES) $(extract_qual_SOURCES) \ $(extract_seq_SOURCES) $(get_comment_SOURCES) \ $(hash_exp_SOURCES) $(hash_extract_SOURCES) \ $(hash_list_SOURCES) $(hash_sff_SOURCES) $(hash_tar_SOURCES) \ $(index_tar_SOURCES) $(makeSCF_SOURCES) $(scf_dump_SOURCES) \ $(scf_info_SOURCES) $(scf_update_SOURCES) \ $(scram_flagstat_SOURCES) $(scram_merge_SOURCES) \ $(scram_pileup_SOURCES) $(scram_test_SOURCES) \ $(scramble_SOURCES) $(srf2fasta_SOURCES) $(srf2fastq_SOURCES) \ $(srf_dump_all_SOURCES) $(srf_extract_hash_SOURCES) \ $(srf_extract_linear_SOURCES) $(srf_filter_SOURCES) \ $(srf_index_hash_SOURCES) $(srf_info_SOURCES) \ $(srf_list_SOURCES) $(trace_dump_SOURCES) $(ztr_dump_SOURCES) am__can_run_installinfo = \ case $$AM_UPDATE_INFO_DIR in \ n|no|NO) false;; \ *) (install-info --version) >/dev/null 2>&1;; \ esac am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) $(LISP) # Read a list of newline-separated strings from the standard input, # and print each of them once, without duplicates. Input order is # *not* preserved. am__uniquify_input = $(AWK) '\ BEGIN { nonempty = 0; } \ { items[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in items) print i; }; } \ ' # Make sure the list of sources is unique. This is necessary because, # e.g., the same source file might be shared among _SOURCES variables # for different programs/libraries. am__define_uniq_tagged_files = \ list='$(am__tagged_files)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | $(am__uniquify_input)` ETAGS = etags CTAGS = ctags am__DIST_COMMON = $(srcdir)/Makefile.in $(top_srcdir)/depcomp DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = ${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing aclocal-1.15 AMTAR = $${TAR-tar} AM_DEFAULT_VERBOSITY = 1 AR = ar AUTOCONF = ${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing autoconf AUTOHEADER = ${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing autoheader AUTOMAKE = ${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing automake-1.15 AWK = gawk CC = /usr/bin/cc CCDEPMODE = depmode=gcc3 CFLAGS = -Wall CPP = /usr/bin/cc -E CPPFLAGS = CYGPATH_W = echo DEFS = -DHAVE_CONFIG_H DEPDIR = .deps DLLTOOL = false DSYMUTIL = DUMPBIN = ECHO_C = ECHO_N = -n ECHO_T = EGREP = /usr/bin/grep -E EXEEXT = FGREP = /usr/bin/grep -F GREP = /usr/bin/grep INSTALL = /usr/bin/install -c INSTALL_DATA = ${INSTALL} -m 644 INSTALL_PROGRAM = ${INSTALL} INSTALL_SCRIPT = ${INSTALL} INSTALL_STRIP_PROGRAM = $(install_sh) -c -s IOLIB_VERSION = 1.14.15 IOLIB_VERSION_MAJOR = 1 IOLIB_VERSION_MINOR = 14 IOLIB_VERSION_PATCH = 15 LD = /usr/bin/ld -m elf_x86_64 LDFLAGS = LIBCURL = LIBCURL_CPPFLAGS = LIBOBJS = LIBS = -lm -lpthread -llzma -lbz2 LIBTOOL = $(SHELL) $(top_builddir)/libtool LIBZ = -lz LIPO = LN_S = ln -s LTLIBOBJS = LT_SYS_LIBRARY_PATH = MAINT = # MAKEINFO = ${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/missing makeinfo MANIFEST_TOOL = : MKDIR_P = /usr/bin/mkdir -p NM = /usr/bin/nm -B NMEDIT = OBJDUMP = objdump OBJEXT = o OTOOL = OTOOL64 = PACKAGE = io_lib PACKAGE_BUGREPORT = PACKAGE_NAME = io_lib PACKAGE_STRING = io_lib 1.14.15 PACKAGE_TARNAME = io_lib PACKAGE_URL = PACKAGE_VERSION = 1.14.15 PATH_SEPARATOR = : RANLIB = ranlib SED = /usr/bin/sed SET_CRAM_IO_CUSTOM_BUFFERING = #define CRAM_IO_CUSTOM_BUFFERING SET_ENDIAN = #define SP_LITTLE_ENDIAN SET_MAKE = SET_STDIO_EXT = #define HAVE_STDIO_EXT_H SHELL = /bin/sh STRIP = strip VERSION = 1.14.15 VERS_AGE = 1 VERS_CURRENT = 15 VERS_REVISION = 2 _libcurl_config = abs_builddir = /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/progs abs_srcdir = /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/progs abs_top_builddir = /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib abs_top_srcdir = /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib ac_ct_AR = ar ac_ct_CC = /usr/bin/cc ac_ct_DUMPBIN = am__include = include am__leading_dot = . am__quote = am__tar = $${TAR-tar} chof - "$$tardir" am__untar = $${TAR-tar} xf - bindir = ${exec_prefix}/bin build = x86_64-pc-linux-gnu build_alias = build_cpu = x86_64 build_os = linux-gnu build_vendor = pc builddir = . datadir = ${datarootdir} datarootdir = ${prefix}/share docdir = ${datarootdir}/doc/${PACKAGE_TARNAME} dvidir = ${docdir} exec_prefix = ${prefix} host = x86_64-pc-linux-gnu host_alias = host_cpu = x86_64 host_os = linux-gnu host_vendor = pc htmldir = ${docdir} includedir = ${prefix}/include infodir = ${datarootdir}/info install_sh = ${SHELL} /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/staden-io_lib/install-sh libdir = ${exec_prefix}/lib libexecdir = ${exec_prefix}/libexec localedir = ${datarootdir}/locale localstatedir = ${prefix}/var mandir = ${datarootdir}/man mkdir_p = $(MKDIR_P) oldincludedir = /usr/include pdfdir = ${docdir} prefix = /home/psgendb/BIRCHDEV/install/salmon-1.10.1/external/install program_transform_name = s,x,x, psdir = ${docdir} runstatedir = ${localstatedir}/run sbindir = ${exec_prefix}/sbin sharedstatedir = ${prefix}/com srcdir = . subdirs_extra = htscodecs sysconfdir = ${prefix}/etc target_alias = top_build_prefix = ../ top_builddir = .. top_srcdir = .. convert_trace_SOURCES = convert_trace.c convert_trace_LDADD = $(top_builddir)/io_lib/libstaden-read.la get_comment_SOURCES = get_comment.c get_comment_LDADD = $(top_builddir)/io_lib/libstaden-read.la makeSCF_SOURCES = makeSCF.c makeSCF_LDADD = $(top_builddir)/io_lib/libstaden-read.la extract_seq_SOURCES = extract_seq.c extract_seq_LDADD = $(top_builddir)/io_lib/libstaden-read.la extract_qual_SOURCES = extract_qual.c extract_qual_LDADD = $(top_builddir)/io_lib/libstaden-read.la extract_fastq_SOURCES = extract_fastq.c extract_fastq_LDADD = $(top_builddir)/io_lib/libstaden-read.la index_tar_SOURCES = index_tar.c scf_dump_SOURCES = scf_dump.c scf_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la scf_info_SOURCES = scf_info.c scf_info_LDADD = $(top_builddir)/io_lib/libstaden-read.la scf_update_SOURCES = scf_update.c scf_update_LDADD = $(top_builddir)/io_lib/libstaden-read.la hash_exp_SOURCES = hash_exp.c hash_exp_LDADD = $(top_builddir)/io_lib/libstaden-read.la hash_tar_SOURCES = hash_tar.c hash_tar_LDADD = $(top_builddir)/io_lib/libstaden-read.la hash_list_SOURCES = hash_list.c hash_list_LDADD = $(top_builddir)/io_lib/libstaden-read.la hash_sff_SOURCES = hash_sff.c hash_sff_LDADD = $(top_builddir)/io_lib/libstaden-read.la append_sff_SOURCES = append_sff.c append_sff_LDADD = $(top_builddir)/io_lib/libstaden-read.la hash_extract_SOURCES = hash_extract.c hash_extract_LDADD = $(top_builddir)/io_lib/libstaden-read.la trace_dump_SOURCES = trace_dump.c trace_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la ztr_dump_SOURCES = ztr_dump.c ztr_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf2fastq_SOURCES = srf2fastq.c srf2fastq_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf2fasta_SOURCES = srf2fasta.c srf2fasta_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_dump_all_SOURCES = srf_dump_all.c srf_dump_all_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_extract_linear_SOURCES = srf_extract_linear.c srf_extract_linear_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_extract_hash_SOURCES = srf_extract_hash.c srf_extract_hash_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_index_hash_SOURCES = srf_index_hash.c srf_index_hash_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_filter_SOURCES = srf_filter.c srf_filter_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_info_SOURCES = srf_info.c srf_info_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_list_SOURCES = srf_list.c srf_list_LDADD = $(top_builddir)/io_lib/libstaden-read.la cram_dump_SOURCES = cram_dump.c cram_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la cram_size_SOURCES = cram_size.c cram_size_LDADD = $(top_builddir)/io_lib/libstaden-read.la cram_index_SOURCES = cram_index.c cram_index_LDADD = $(top_builddir)/io_lib/libstaden-read.la #cram_to_sam_SOURCES = cram_to_sam.c #cram_to_sam_LDADD = $(top_builddir)/io_lib/libstaden-read.la # #sam_to_cram_SOURCES = sam_to_cram.c #sam_to_cram_LDADD = $(top_builddir)/io_lib/libstaden-read.la # #sam_convert_SOURCES = sam_convert.c #sam_convert_LDADD = $(top_builddir)/io_lib/libstaden-read.la scramble_SOURCES = scramble.c scramble_LDADD = $(top_builddir)/io_lib/libstaden-read.la scram_merge_SOURCES = scram_merge.c scram_merge_LDADD = $(top_builddir)/io_lib/libstaden-read.la scram_pileup_SOURCES = scram_pileup.c scram_pileup.h scram_pileup_LDADD = $(top_builddir)/io_lib/libstaden-read.la scram_flagstat_SOURCES = scram_flagstat.c scram_flagstat_LDADD = $(top_builddir)/io_lib/libstaden-read.la scram_test_SOURCES = scram_test.c scram_test_LDADD = $(top_builddir)/io_lib/libstaden-read.la cram_filter_SOURCES = cram_filter.c cram_filter_LDADD = $(top_builddir)/io_lib/libstaden-read.la AM_CPPFLAGS = -I${top_srcdir} -I${top_srcdir}/htscodecs all: all-am .SUFFIXES: .SUFFIXES: .c .lo .o .obj $(srcdir)/Makefile.in: # $(srcdir)/Makefile.am $(am__configure_deps) @for dep in $?; do \ case '$(am__configure_deps)' in \ *$$dep*) \ ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \ && { if test -f $@; then exit 0; else break; fi; }; \ exit 1;; \ esac; \ done; \ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu progs/Makefile'; \ $(am__cd) $(top_srcdir) && \ $(AUTOMAKE) --gnu progs/Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ *config.status*) \ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \ *) \ echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(top_srcdir)/configure: # $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): # $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(am__aclocal_m4_deps): install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ if test -n "$$list"; then \ echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p \ || test -f $$p1 \ ; then echo "$$p"; echo "$$p"; else :; fi; \ done | \ sed -e 'p;s,.*/,,;n;h' \ -e 's|.*|.|' \ -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \ sed 'N;N;N;s,\n, ,g' | \ $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \ { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ if ($$2 == $$4) files[d] = files[d] " " $$1; \ else { print "f", $$3 "/" $$4, $$1; } } \ END { for (d in files) print "f", d, files[d] }' | \ while read type dir files; do \ if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ test -z "$$files" || { \ echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \ $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ } \ ; done uninstall-binPROGRAMS: @$(NORMAL_UNINSTALL) @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ files=`for p in $$list; do echo "$$p"; done | \ sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \ -e 's/$$/$(EXEEXT)/' \ `; \ test -n "$$list" || exit 0; \ echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ cd "$(DESTDIR)$(bindir)" && rm -f $$files clean-binPROGRAMS: @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \ echo " rm -f" $$list; \ rm -f $$list || exit $$?; \ test -n "$(EXEEXT)" || exit 0; \ list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list append_sff$(EXEEXT): $(append_sff_OBJECTS) $(append_sff_DEPENDENCIES) $(EXTRA_append_sff_DEPENDENCIES) @rm -f append_sff$(EXEEXT) $(AM_V_CCLD)$(LINK) $(append_sff_OBJECTS) $(append_sff_LDADD) $(LIBS) convert_trace$(EXEEXT): $(convert_trace_OBJECTS) $(convert_trace_DEPENDENCIES) $(EXTRA_convert_trace_DEPENDENCIES) @rm -f convert_trace$(EXEEXT) $(AM_V_CCLD)$(LINK) $(convert_trace_OBJECTS) $(convert_trace_LDADD) $(LIBS) cram_dump$(EXEEXT): $(cram_dump_OBJECTS) $(cram_dump_DEPENDENCIES) $(EXTRA_cram_dump_DEPENDENCIES) @rm -f cram_dump$(EXEEXT) $(AM_V_CCLD)$(LINK) $(cram_dump_OBJECTS) $(cram_dump_LDADD) $(LIBS) cram_filter$(EXEEXT): $(cram_filter_OBJECTS) $(cram_filter_DEPENDENCIES) $(EXTRA_cram_filter_DEPENDENCIES) @rm -f cram_filter$(EXEEXT) $(AM_V_CCLD)$(LINK) $(cram_filter_OBJECTS) $(cram_filter_LDADD) $(LIBS) cram_index$(EXEEXT): $(cram_index_OBJECTS) $(cram_index_DEPENDENCIES) $(EXTRA_cram_index_DEPENDENCIES) @rm -f cram_index$(EXEEXT) $(AM_V_CCLD)$(LINK) $(cram_index_OBJECTS) $(cram_index_LDADD) $(LIBS) cram_size$(EXEEXT): $(cram_size_OBJECTS) $(cram_size_DEPENDENCIES) $(EXTRA_cram_size_DEPENDENCIES) @rm -f cram_size$(EXEEXT) $(AM_V_CCLD)$(LINK) $(cram_size_OBJECTS) $(cram_size_LDADD) $(LIBS) extract_fastq$(EXEEXT): $(extract_fastq_OBJECTS) $(extract_fastq_DEPENDENCIES) $(EXTRA_extract_fastq_DEPENDENCIES) @rm -f extract_fastq$(EXEEXT) $(AM_V_CCLD)$(LINK) $(extract_fastq_OBJECTS) $(extract_fastq_LDADD) $(LIBS) extract_qual$(EXEEXT): $(extract_qual_OBJECTS) $(extract_qual_DEPENDENCIES) $(EXTRA_extract_qual_DEPENDENCIES) @rm -f extract_qual$(EXEEXT) $(AM_V_CCLD)$(LINK) $(extract_qual_OBJECTS) $(extract_qual_LDADD) $(LIBS) extract_seq$(EXEEXT): $(extract_seq_OBJECTS) $(extract_seq_DEPENDENCIES) $(EXTRA_extract_seq_DEPENDENCIES) @rm -f extract_seq$(EXEEXT) $(AM_V_CCLD)$(LINK) $(extract_seq_OBJECTS) $(extract_seq_LDADD) $(LIBS) get_comment$(EXEEXT): $(get_comment_OBJECTS) $(get_comment_DEPENDENCIES) $(EXTRA_get_comment_DEPENDENCIES) @rm -f get_comment$(EXEEXT) $(AM_V_CCLD)$(LINK) $(get_comment_OBJECTS) $(get_comment_LDADD) $(LIBS) hash_exp$(EXEEXT): $(hash_exp_OBJECTS) $(hash_exp_DEPENDENCIES) $(EXTRA_hash_exp_DEPENDENCIES) @rm -f hash_exp$(EXEEXT) $(AM_V_CCLD)$(LINK) $(hash_exp_OBJECTS) $(hash_exp_LDADD) $(LIBS) hash_extract$(EXEEXT): $(hash_extract_OBJECTS) $(hash_extract_DEPENDENCIES) $(EXTRA_hash_extract_DEPENDENCIES) @rm -f hash_extract$(EXEEXT) $(AM_V_CCLD)$(LINK) $(hash_extract_OBJECTS) $(hash_extract_LDADD) $(LIBS) hash_list$(EXEEXT): $(hash_list_OBJECTS) $(hash_list_DEPENDENCIES) $(EXTRA_hash_list_DEPENDENCIES) @rm -f hash_list$(EXEEXT) $(AM_V_CCLD)$(LINK) $(hash_list_OBJECTS) $(hash_list_LDADD) $(LIBS) hash_sff$(EXEEXT): $(hash_sff_OBJECTS) $(hash_sff_DEPENDENCIES) $(EXTRA_hash_sff_DEPENDENCIES) @rm -f hash_sff$(EXEEXT) $(AM_V_CCLD)$(LINK) $(hash_sff_OBJECTS) $(hash_sff_LDADD) $(LIBS) hash_tar$(EXEEXT): $(hash_tar_OBJECTS) $(hash_tar_DEPENDENCIES) $(EXTRA_hash_tar_DEPENDENCIES) @rm -f hash_tar$(EXEEXT) $(AM_V_CCLD)$(LINK) $(hash_tar_OBJECTS) $(hash_tar_LDADD) $(LIBS) index_tar$(EXEEXT): $(index_tar_OBJECTS) $(index_tar_DEPENDENCIES) $(EXTRA_index_tar_DEPENDENCIES) @rm -f index_tar$(EXEEXT) $(AM_V_CCLD)$(LINK) $(index_tar_OBJECTS) $(index_tar_LDADD) $(LIBS) makeSCF$(EXEEXT): $(makeSCF_OBJECTS) $(makeSCF_DEPENDENCIES) $(EXTRA_makeSCF_DEPENDENCIES) @rm -f makeSCF$(EXEEXT) $(AM_V_CCLD)$(LINK) $(makeSCF_OBJECTS) $(makeSCF_LDADD) $(LIBS) scf_dump$(EXEEXT): $(scf_dump_OBJECTS) $(scf_dump_DEPENDENCIES) $(EXTRA_scf_dump_DEPENDENCIES) @rm -f scf_dump$(EXEEXT) $(AM_V_CCLD)$(LINK) $(scf_dump_OBJECTS) $(scf_dump_LDADD) $(LIBS) scf_info$(EXEEXT): $(scf_info_OBJECTS) $(scf_info_DEPENDENCIES) $(EXTRA_scf_info_DEPENDENCIES) @rm -f scf_info$(EXEEXT) $(AM_V_CCLD)$(LINK) $(scf_info_OBJECTS) $(scf_info_LDADD) $(LIBS) scf_update$(EXEEXT): $(scf_update_OBJECTS) $(scf_update_DEPENDENCIES) $(EXTRA_scf_update_DEPENDENCIES) @rm -f scf_update$(EXEEXT) $(AM_V_CCLD)$(LINK) $(scf_update_OBJECTS) $(scf_update_LDADD) $(LIBS) scram_flagstat$(EXEEXT): $(scram_flagstat_OBJECTS) $(scram_flagstat_DEPENDENCIES) $(EXTRA_scram_flagstat_DEPENDENCIES) @rm -f scram_flagstat$(EXEEXT) $(AM_V_CCLD)$(LINK) $(scram_flagstat_OBJECTS) $(scram_flagstat_LDADD) $(LIBS) scram_merge$(EXEEXT): $(scram_merge_OBJECTS) $(scram_merge_DEPENDENCIES) $(EXTRA_scram_merge_DEPENDENCIES) @rm -f scram_merge$(EXEEXT) $(AM_V_CCLD)$(LINK) $(scram_merge_OBJECTS) $(scram_merge_LDADD) $(LIBS) scram_pileup$(EXEEXT): $(scram_pileup_OBJECTS) $(scram_pileup_DEPENDENCIES) $(EXTRA_scram_pileup_DEPENDENCIES) @rm -f scram_pileup$(EXEEXT) $(AM_V_CCLD)$(LINK) $(scram_pileup_OBJECTS) $(scram_pileup_LDADD) $(LIBS) scram_test$(EXEEXT): $(scram_test_OBJECTS) $(scram_test_DEPENDENCIES) $(EXTRA_scram_test_DEPENDENCIES) @rm -f scram_test$(EXEEXT) $(AM_V_CCLD)$(LINK) $(scram_test_OBJECTS) $(scram_test_LDADD) $(LIBS) scramble$(EXEEXT): $(scramble_OBJECTS) $(scramble_DEPENDENCIES) $(EXTRA_scramble_DEPENDENCIES) @rm -f scramble$(EXEEXT) $(AM_V_CCLD)$(LINK) $(scramble_OBJECTS) $(scramble_LDADD) $(LIBS) srf2fasta$(EXEEXT): $(srf2fasta_OBJECTS) $(srf2fasta_DEPENDENCIES) $(EXTRA_srf2fasta_DEPENDENCIES) @rm -f srf2fasta$(EXEEXT) $(AM_V_CCLD)$(LINK) $(srf2fasta_OBJECTS) $(srf2fasta_LDADD) $(LIBS) srf2fastq$(EXEEXT): $(srf2fastq_OBJECTS) $(srf2fastq_DEPENDENCIES) $(EXTRA_srf2fastq_DEPENDENCIES) @rm -f srf2fastq$(EXEEXT) $(AM_V_CCLD)$(LINK) $(srf2fastq_OBJECTS) $(srf2fastq_LDADD) $(LIBS) srf_dump_all$(EXEEXT): $(srf_dump_all_OBJECTS) $(srf_dump_all_DEPENDENCIES) $(EXTRA_srf_dump_all_DEPENDENCIES) @rm -f srf_dump_all$(EXEEXT) $(AM_V_CCLD)$(LINK) $(srf_dump_all_OBJECTS) $(srf_dump_all_LDADD) $(LIBS) srf_extract_hash$(EXEEXT): $(srf_extract_hash_OBJECTS) $(srf_extract_hash_DEPENDENCIES) $(EXTRA_srf_extract_hash_DEPENDENCIES) @rm -f srf_extract_hash$(EXEEXT) $(AM_V_CCLD)$(LINK) $(srf_extract_hash_OBJECTS) $(srf_extract_hash_LDADD) $(LIBS) srf_extract_linear$(EXEEXT): $(srf_extract_linear_OBJECTS) $(srf_extract_linear_DEPENDENCIES) $(EXTRA_srf_extract_linear_DEPENDENCIES) @rm -f srf_extract_linear$(EXEEXT) $(AM_V_CCLD)$(LINK) $(srf_extract_linear_OBJECTS) $(srf_extract_linear_LDADD) $(LIBS) srf_filter$(EXEEXT): $(srf_filter_OBJECTS) $(srf_filter_DEPENDENCIES) $(EXTRA_srf_filter_DEPENDENCIES) @rm -f srf_filter$(EXEEXT) $(AM_V_CCLD)$(LINK) $(srf_filter_OBJECTS) $(srf_filter_LDADD) $(LIBS) srf_index_hash$(EXEEXT): $(srf_index_hash_OBJECTS) $(srf_index_hash_DEPENDENCIES) $(EXTRA_srf_index_hash_DEPENDENCIES) @rm -f srf_index_hash$(EXEEXT) $(AM_V_CCLD)$(LINK) $(srf_index_hash_OBJECTS) $(srf_index_hash_LDADD) $(LIBS) srf_info$(EXEEXT): $(srf_info_OBJECTS) $(srf_info_DEPENDENCIES) $(EXTRA_srf_info_DEPENDENCIES) @rm -f srf_info$(EXEEXT) $(AM_V_CCLD)$(LINK) $(srf_info_OBJECTS) $(srf_info_LDADD) $(LIBS) srf_list$(EXEEXT): $(srf_list_OBJECTS) $(srf_list_DEPENDENCIES) $(EXTRA_srf_list_DEPENDENCIES) @rm -f srf_list$(EXEEXT) $(AM_V_CCLD)$(LINK) $(srf_list_OBJECTS) $(srf_list_LDADD) $(LIBS) trace_dump$(EXEEXT): $(trace_dump_OBJECTS) $(trace_dump_DEPENDENCIES) $(EXTRA_trace_dump_DEPENDENCIES) @rm -f trace_dump$(EXEEXT) $(AM_V_CCLD)$(LINK) $(trace_dump_OBJECTS) $(trace_dump_LDADD) $(LIBS) ztr_dump$(EXEEXT): $(ztr_dump_OBJECTS) $(ztr_dump_DEPENDENCIES) $(EXTRA_ztr_dump_DEPENDENCIES) @rm -f ztr_dump$(EXEEXT) $(AM_V_CCLD)$(LINK) $(ztr_dump_OBJECTS) $(ztr_dump_LDADD) $(LIBS) mostlyclean-compile: -rm -f *.$(OBJEXT) distclean-compile: -rm -f *.tab.c include ./$(DEPDIR)/append_sff.Po include ./$(DEPDIR)/convert_trace.Po include ./$(DEPDIR)/cram_dump.Po include ./$(DEPDIR)/cram_filter.Po include ./$(DEPDIR)/cram_index.Po include ./$(DEPDIR)/cram_size.Po include ./$(DEPDIR)/extract_fastq.Po include ./$(DEPDIR)/extract_qual.Po include ./$(DEPDIR)/extract_seq.Po include ./$(DEPDIR)/get_comment.Po include ./$(DEPDIR)/hash_exp.Po include ./$(DEPDIR)/hash_extract.Po include ./$(DEPDIR)/hash_list.Po include ./$(DEPDIR)/hash_sff.Po include ./$(DEPDIR)/hash_tar.Po include ./$(DEPDIR)/index_tar.Po include ./$(DEPDIR)/makeSCF.Po include ./$(DEPDIR)/scf_dump.Po include ./$(DEPDIR)/scf_info.Po include ./$(DEPDIR)/scf_update.Po include ./$(DEPDIR)/scram_flagstat.Po include ./$(DEPDIR)/scram_merge.Po include ./$(DEPDIR)/scram_pileup.Po include ./$(DEPDIR)/scram_test.Po include ./$(DEPDIR)/scramble.Po include ./$(DEPDIR)/srf2fasta.Po include ./$(DEPDIR)/srf2fastq.Po include ./$(DEPDIR)/srf_dump_all.Po include ./$(DEPDIR)/srf_extract_hash.Po include ./$(DEPDIR)/srf_extract_linear.Po include ./$(DEPDIR)/srf_filter.Po include ./$(DEPDIR)/srf_index_hash.Po include ./$(DEPDIR)/srf_info.Po include ./$(DEPDIR)/srf_list.Po include ./$(DEPDIR)/trace_dump.Po include ./$(DEPDIR)/ztr_dump.Po .c.o: $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po # $(AM_V_CC)source='$<' object='$@' libtool=no \ # DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \ # $(AM_V_CC_no)$(COMPILE) -c -o $@ $< .c.obj: $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po # $(AM_V_CC)source='$<' object='$@' libtool=no \ # DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \ # $(AM_V_CC_no)$(COMPILE) -c -o $@ `$(CYGPATH_W) '$<'` .c.lo: $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo # $(AM_V_CC)source='$<' object='$@' libtool=yes \ # DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \ # $(AM_V_CC_no)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo clean-libtool: -rm -rf .libs _libs ID: $(am__tagged_files) $(am__define_uniq_tagged_files); mkid -fID $$unique tags: tags-am TAGS: tags tags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files) set x; \ here=`pwd`; \ $(am__define_uniq_tagged_files); \ shift; \ if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ if test $$# -gt 0; then \ $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ "$$@" $$unique; \ else \ $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ $$unique; \ fi; \ fi ctags: ctags-am CTAGS: ctags ctags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files) $(am__define_uniq_tagged_files); \ test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" cscopelist: cscopelist-am cscopelist-am: $(am__tagged_files) list='$(am__tagged_files)'; \ case "$(srcdir)" in \ [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ *) sdir=$(subdir)/$(srcdir) ;; \ esac; \ for i in $$list; do \ if test -f "$$i"; then \ echo "$(subdir)/$$i"; \ else \ echo "$$sdir/$$i"; \ fi; \ done >> $(top_builddir)/cscope.files distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags distdir: $(DISTFILES) @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ list='$(DISTFILES)'; \ dist_files=`for file in $$list; do echo $$file; done | \ sed -e "s|^$$srcdirstrip/||;t" \ -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \ case $$dist_files in \ */*) $(MKDIR_P) `echo "$$dist_files" | \ sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \ sort -u` ;; \ esac; \ for file in $$dist_files; do \ if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ if test -d "$(distdir)/$$file"; then \ find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ test -f "$(distdir)/$$file" \ || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done check-am: all-am check: check-am all-am: Makefile $(PROGRAMS) installdirs: for dir in "$(DESTDIR)$(bindir)"; do \ test -z "$$dir" || $(MKDIR_P) "$$dir"; \ done install: install-am install-exec: install-exec-am install-data: install-data-am uninstall: uninstall-am install-am: all-am @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am installcheck: installcheck-am install-strip: if test -z '$(STRIP)'; then \ $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ install; \ else \ $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ fi mostlyclean-generic: clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) maintainer-clean-generic: @echo "This command is intended for maintainers to use" @echo "it deletes files that may require special tools to rebuild." clean: clean-am clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am distclean: distclean-am -rm -rf ./$(DEPDIR) -rm -f Makefile distclean-am: clean-am distclean-compile distclean-generic \ distclean-tags dvi: dvi-am dvi-am: html: html-am html-am: info: info-am info-am: install-data-am: install-dvi: install-dvi-am install-dvi-am: install-exec-am: install-binPROGRAMS install-html: install-html-am install-html-am: install-info: install-info-am install-info-am: install-man: install-pdf: install-pdf-am install-pdf-am: install-ps: install-ps-am install-ps-am: installcheck-am: maintainer-clean: maintainer-clean-am -rm -rf ./$(DEPDIR) -rm -f Makefile maintainer-clean-am: distclean-am maintainer-clean-generic mostlyclean: mostlyclean-am mostlyclean-am: mostlyclean-compile mostlyclean-generic \ mostlyclean-libtool pdf: pdf-am pdf-am: ps: ps-am ps-am: uninstall-am: uninstall-binPROGRAMS .MAKE: install-am install-strip .PHONY: CTAGS GTAGS TAGS all all-am check check-am clean \ clean-binPROGRAMS clean-generic clean-libtool cscopelist-am \ ctags ctags-am distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-binPROGRAMS \ install-data install-data-am install-dvi install-dvi-am \ install-exec install-exec-am install-html install-html-am \ install-info install-info-am install-man install-pdf \ install-pdf-am install-ps install-ps-am install-strip \ installcheck installcheck-am installdirs maintainer-clean \ maintainer-clean-generic mostlyclean mostlyclean-compile \ mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \ tags tags-am uninstall uninstall-am uninstall-binPROGRAMS .PRECIOUS: Makefile # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: