#include "SalmonExceptions.hpp"

InsufficientAssignedFragments::InsufficientAssignedFragments(
    uint64_t numAssigned, uint64_t numRequired) noexcept
    : std::runtime_error(""), numAssigned_(numAssigned),
      numRequired_(numRequired) {
  cnvt.str("");
  cnvt
      << "salmon was only able to assign " << numAssigned_
      << " fragments to transcripts in the index, "
         "but the minimum number of required assigned fragments "
         "(--minAssignedFrags) "
         "was "
      << numRequired_
      << ". This could be indicative of a mismatch between the reference and "
         "sample, or a very bad sample.  You can change the --minAssignedFrags "
         "parameter to force salmon to quantify with fewer assigned fragments "
         "(must have at least 1).";
  msg_ = cnvt.str();
}

InsufficientAssignedFragments::InsufficientAssignedFragments(
    InsufficientAssignedFragments&& other)
    : std::runtime_error("") {
  //  cnvt = other.cnvt;
  msg_ = other.msg_;
  numAssigned_ = other.numAssigned_;
  numRequired_ = other.numRequired_;
}

const char* InsufficientAssignedFragments::what() const throw() {
  return msg_.c_str();
}