Index of /~psgendb/birchhomedir/BIRCHDEV/install/trinityrnaseq-Trinity-v2.8.4/util/support_scripts

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[ ]ExitTester.jar 2018-09-12 05:08 8.1K 
[ ]GG_partitioned_trini..>2018-09-12 05:08 636  
[ ]SAM_coordSorted_frag..>2018-09-12 05:08 2.0K 
[ ]SAM_coordSorted_frag..>2018-09-12 05:08 3.2K 
[ ]SAM_extract_properly..>2018-09-12 05:08 817  
[ ]SAM_extract_uniquely..>2018-09-12 05:08 1.2K 
[ ]SAM_filter_out_unmap..>2018-09-12 05:08 952  
[ ]SAM_ordered_pair_jac..>2018-09-12 05:08 2.5K 
[ ]SAM_set_transcribed_..>2018-09-12 05:08 2.1K 
[ ]SAM_strand_separator.pl2018-09-12 05:08 1.1K 
[ ]SAM_to_frag_coords.pl 2018-09-12 05:08 8.6K 
[ ]add_LR_reads_to_iwor..>2018-09-12 05:08 1.3K 
[ ]annotate_chrysalis_w..>2018-09-12 05:08 1.1K 
[ ]batch_cmds.pl 2018-09-12 05:08 1.5K 
[ ]bowtie2_wrapper.pl 2018-09-12 05:08 8.4K 
[ ]define_SAM_coverage_..>2018-09-12 05:08 1.3K 
[ ]define_coverage_part..>2018-09-12 05:08 1.4K 
[ ]eXpress_trans_to_gen..>2018-09-12 05:08 4.7K 
[ ]ensure_coord_sorted_..>2018-09-12 05:08 2.2K 
[ ]extract_reads_per_pa..>2018-09-12 05:08 6.9K 
[ ]fastQ_to_fastA.pl 2018-09-12 05:08 3.0K 
[ ]fastQ_to_tab.pl 2018-09-12 05:08 2.4K 
[ ]fasta_find_duplicate..>2018-09-12 05:08 905  
[ ]fasta_to_tab.pl 2018-09-12 05:08 712  
[ ]filter_iworm_by_min_..>2018-09-12 05:08 756  
[ ]filter_transcripts_r..>2018-09-12 05:08 2.8K 
[ ]fragment_coverage_wr..>2018-09-12 05:08 1.8K 
[ ]get_Trinity_gene_to_..>2018-09-12 05:08 523  
[ ]inchworm_transcript_..>2018-09-12 05:08 4.3K 
[ ]iworm_LR_to_scaff_pa..>2018-09-12 05:08 8.4K 
[ ]jaccard_fasta_clippe..>2018-09-12 05:08 1.9K 
[ ]jaccard_wig_clipper.pl 2018-09-12 05:08 7.1K 
[ ]join_partitions_with..>2018-09-12 05:08 704  
[ ]kallisto_trans_to_ge..>2018-09-12 05:08 4.5K 
[ ]merge_pair_and_LR_sc..>2018-09-12 05:08 1.0K 
[ ]nbkc_merge_left_righ..>2018-09-12 05:08 3.8K 
[ ]nbkc_normalize.pl 2018-09-12 05:08 2.7K 
[ ]ordered_fragment_coo..>2018-09-12 05:08 18K 
[ ]outfmt6_add_percent_..>2018-09-12 05:08 1.8K 
[ ]partition_chrysalis_..>2018-09-12 05:08 6.2K 
[ ]partitioned_trinity_..>2018-09-12 05:08 3.8K 
[ ]plugin_install_tests.sh2018-09-12 05:08 416  
[ ]prep_rnaseq_alignmen..>2018-09-12 05:08 5.5K 
[ ]print_butterfly_asse..>2018-09-12 05:08 892  
[ ]process_GMAP_alignme..>2018-09-12 05:08 1.6K 
[ ]revcomp_fasta.pl 2018-09-12 05:08 571  
[ ]run_TMM_scale_matrix.pl2018-09-12 05:08 5.2K 
[ ]run_UpperQuartileNor..>2018-09-12 05:08 2.5K 
[ ]salmon_runner.pl 2018-09-12 05:08 607  
[ ]salmon_trans_to_gene..>2018-09-12 05:08 4.9K 
[ ]scaffold_iworm_conti..>2018-09-12 05:08 8.0K 
[ ]segment_GFF_partitio..>2018-09-12 05:08 2.9K 
[DIR]tests/ 2018-09-12 05:08 -  
[ ]trinity_install_test..>2018-09-12 05:08 1.2K 
[ ]trinity_installer.py 2018-09-12 05:08 842  
[ ]wig_clip_to_bed.pl 2018-09-12 05:08 1.3K 
[ ]write_partitioned_tr..>2018-09-12 05:08 1.6K