#!/bin/sh # simple script to execute java with the appropriate options to run Jalview # Change JAVA_CMD to the location of your java binary if necessary # Change the values of the -Xms and -Xmx parameters if you are getting # out of memory errors # # JAVA8_CMD should be set before running this script. # The best place to do that is in $BIRCH/local/local.profile.source # For testing purposes, you can uncomment the line below and # modify it for the appropriate Java command on your system. #JAVA8_CMD="/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc35.x86_64/jre/bin/java" if [ ! -z "$JAVA8_CMD" ] then JAVA_CMD="$JAVA8_CMD" else JAVA_CMD="java" fi echo "JAVA_CMD: " $JAVA_CMD # Check for Java8 JVERSION=`$JAVA_CMD -version 2>&1 | head -n 1 | cut -f2 -d'"' | cut -f2 -d"."` echo "JVERSION: "$JVERSION if [ "$JVERSION" = "8" ] then $JAVA_CMD -jar $BIRCH/java/Jalview/jalview-all-2.11.2.1-j1.8.jar "$@" else MESSAGE="Jalview requires Java8." TITLE="Dependencies" java -jar $BIRCH/script/OkayBox2.jar "$MESSAGE" "$TITLE" chooseviewer.py $BIRCH/public_html/birchadmin/dependencies/dependencies.html fi