/* FeatureContigPredicate * * created: July 2010 * * This file is part of Artemis * * Copyright(C) 2010 Genome Research Limited * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation; either version 2 * of the License, or(at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. * */ package uk.ac.sanger.artemis.components.variant; import uk.ac.sanger.artemis.Feature; import uk.ac.sanger.artemis.FeaturePredicate; public class FeatureContigPredicate implements FeaturePredicate { private String contigName; public FeatureContigPredicate(String contigName) { this.contigName = contigName; } public boolean testPredicate(Feature feature) { String id = feature.getIDString().trim(); if(id.equals(contigName)) return true; // allow for description in the ID if(id.startsWith(contigName+" ")) return true; return false; } }