/* * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should * be distributed with the code. If you do not have a copy, * see: * * http://www.gnu.org/copyleft/lesser.html * * Copyright for this code is held jointly by the individual * authors. These should be listed in @author doc comments. * * For more information on the BioJava project and its aims, * or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * */ package org.biojava.bio.gui.sequence; import java.awt.Graphics2D; import java.awt.event.MouseEvent; import java.io.Serializable; import java.util.ArrayList; import java.util.Collections; import java.util.Iterator; import java.util.List; import org.biojava.utils.AbstractChangeable; import org.biojava.utils.ChangeEvent; import org.biojava.utils.ChangeForwarder; import org.biojava.utils.ChangeSupport; import org.biojava.utils.ChangeType; import org.biojava.utils.ChangeVetoException; import org.biojava.utils.Changeable; /** * PairwiseOverlayRenderer allows a list of other * PairwiseSequenceRenderers to superimpose their * output. Operations on the child renderers (rendering, event * handling) are carried out in the order in which they were * added. * * @author Keith James * @author Matthew Pocock * @since 1.2 */ public class PairwiseOverlayRenderer extends AbstractChangeable implements PairwiseSequenceRenderer, Serializable { /** * Constant RENDERERS indicating a change to the * renderers handled by the overlay. */ public static final ChangeType RENDERERS = new ChangeType("A PairwiseSequenceRenderer has been added or removed", "org.biojava.bio.gui.sequence.PairwiseOverlayRenderer", "RENDERERS", SequenceRenderContext.LAYOUT); private List renderers; private transient ChangeForwarder rendererForwarder = null; /** * Creates a new, empty PairwiseOverlayRenderer. */ public PairwiseOverlayRenderer() { renderers = new ArrayList(); } /** * addRenderer adds a renderer. * * @param renderer a PairwiseSequenceRenderer. * * @exception ChangeVetoException if an error occurs. */ public void addRenderer(PairwiseSequenceRenderer renderer) throws ChangeVetoException { if (hasListeners()) { ChangeSupport cs = getChangeSupport(RENDERERS); ChangeEvent ce = new ChangeEvent(this, RENDERERS, renderer, null); synchronized(cs) { cs.firePreChangeEvent(ce); _addRenderer(renderer); if (renderer instanceof Changeable) { Changeable c = (Changeable) renderer; c.addChangeListener(rendererForwarder, SequenceRenderContext.REPAINT); } cs.firePostChangeEvent(ce); } } else { _addRenderer(renderer); } } /** * removeRenderer removes a renderer. * * @param renderer a PairwiseSequenceRenderer. * * @exception ChangeVetoException if an error occurs. */ public void removeRenderer(PairwiseSequenceRenderer renderer) throws ChangeVetoException { if (hasListeners()) { ChangeSupport cs = getChangeSupport(RENDERERS); ChangeEvent ce = new ChangeEvent(this, RENDERERS, null, renderer); synchronized(cs) { cs.firePreChangeEvent(ce); _removeRenderer(renderer); if (renderer instanceof Changeable) { Changeable c = (Changeable) renderer; c.removeChangeListener(rendererForwarder, SequenceRenderContext.REPAINT); } cs.firePostChangeEvent(ce); } } else { _removeRenderer(renderer); } } /** * clearRenderers removes all the renderers. * * @exception ChangeVetoException if an error occurs. */ public void clearRenderers() throws ChangeVetoException { if (hasListeners()) { ChangeSupport cs = getChangeSupport(RENDERERS); ChangeEvent ce = new ChangeEvent(this, RENDERERS); synchronized(cs) { cs.firePreChangeEvent(ce); for (Iterator i = renderers.iterator(); i.hasNext();) { Object renderer = i.next(); if (renderer instanceof Changeable) { Changeable c = (Changeable) renderer; c.removeChangeListener(rendererForwarder, SequenceRenderContext.REPAINT); } } renderers.clear(); cs.firePostChangeEvent(ce); } } else { renderers.clear(); } } /** * paint applies all renderers in the order in which * they were added. * * @param g2 a Graphics2D. * @param context a PairwiseRenderContext. */ public void paint(Graphics2D g2, PairwiseRenderContext context) { for (Iterator ri = renderers.iterator(); ri.hasNext();) { PairwiseSequenceRenderer renderer = (PairwiseSequenceRenderer) ri.next(); renderer.paint(g2, context); } } protected ChangeSupport getChangeSupport(ChangeType ct) { ChangeSupport cs = super.getChangeSupport(ct); if (rendererForwarder == null) { rendererForwarder = new PairwiseSequenceRenderer.PairwiseRendererForwarder(this, cs); for (Iterator i = renderers.iterator(); i.hasNext();) { PairwiseSequenceRenderer renderer = (PairwiseSequenceRenderer) i.next(); if (renderer instanceof Changeable) { Changeable c = (Changeable) renderer; c.addChangeListener(rendererForwarder, SequenceRenderContext.REPAINT); } } } return cs; } /** * processMouseEvent produces a * SequenceViewerEvent in response to a mouse * gesture. The list of renderers are probed in the order in which * they were added and the first renderer to accept the event will * return. * * @param context a PairwiseRenderContext. * @param me a MouseEvent that caused the request. * @param path a List of * PairwiseSequenceRenderer instances passed through * so far. * * @return a SequenceViewerEvent encapsulating the * mouse gesture. */ public SequenceViewerEvent processMouseEvent(PairwiseRenderContext context, MouseEvent me, List path) { path.add(this); SequenceViewerEvent event = null; List contextCopies = Collections.nCopies(renderers.size(), context); Iterator ci = contextCopies.iterator(); Iterator ri = renderers.iterator(); while (ci.hasNext() && ri.hasNext()) { PairwiseRenderContext contextCopy = (PairwiseRenderContext) ci.next(); PairwiseSequenceRenderer renderer = (PairwiseSequenceRenderer) ri.next(); event = renderer.processMouseEvent(contextCopy, me, path); } if (event == null) event = new SequenceViewerEvent(this, null, context.graphicsToSequence(me.getPoint()), me, path); return event; } protected void _addRenderer(PairwiseSequenceRenderer renderer) { renderers.add(renderer); } protected void _removeRenderer(PairwiseSequenceRenderer renderer) { renderers.remove(renderer); } }