/* * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should * be distributed with the code. If you do not have a copy, * see: * * http://www.gnu.org/copyleft/lesser.html * * Copyright for this code is held jointly by the individual * authors. These should be listed in @author doc comments. * * For more information on the BioJava project and its aims, * or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * */ package org.biojava.bio.program.blast2html; /** *
* Interface for specifying whether a particular pair * of residues/bases should be coloured. *
* ** This can be independent of the method that * chooses which colour. *
* ** Example usage: highlight mismatches only. *
* ** Primary author - * Colin Hardman (CAT) * Other authors - * Tim Dilks (CAT) * Simon Brocklehurst (CAT) * Stuart Johnston (CAT) * Lawerence Bower (CAT) * Derek Crockford (CAT) * Neil Benn (CAT) * * Copyright 2001 Cambridge Antibody Technology Group plc. ** *
* This code released to the biojava project, May 2001 * under the LGPL license. *
* * @author Cambridge Antibody Technology Group plc * @version 1.0 * */ public interface ColourCommand { /** * Returns true if the alignment pair should be coloured * else false. * * @param poFirst - the first character * @param poSecond - the second character. * @return boolean - true if colour, else false. */ public boolean isColoured( String poFirst, String poSecond ); }