/* * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should * be distributed with the code. If you do not have a copy, * see: * * http://www.gnu.org/copyleft/lesser.html * * Copyright for this code is held jointly by the individual * authors. These should be listed in @author doc comments. * * For more information on the BioJava project and its aims, * or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * */ package org.biojava.bio.program.das; import java.net.URL; import java.util.Collections; import java.util.HashSet; import java.util.Set; import org.biojava.bio.BioException; import org.biojava.bio.seq.db.SequenceDB; import org.biojava.bio.seq.distributed.DistDataSource; import org.biojava.utils.ChangeEvent; import org.biojava.utils.ChangeListener; import org.biojava.utils.ChangeSupport; import org.biojava.utils.ChangeType; import org.biojava.utils.ChangeVetoException; import org.biojava.utils.Changeable; /** * Reflects a reference server on the DAS network. * * @author Matthew Pocock * @author Thomas Down */ public class ReferenceServer extends DataSource implements Changeable { public static final ChangeType ANNOTATOR = new ChangeType( "Annotator added", ReferenceServer.class, "ANNOTATOR" ); private Set annotators; private Set publicAnnotators; private transient ChangeSupport changeSupport = null; protected boolean hasListeners() { return changeSupport != null; } protected ChangeSupport getChangeSupport(ChangeType ct) { if(changeSupport != null) { return changeSupport; } synchronized(this) { if(changeSupport == null) { changeSupport = new ChangeSupport(); } } return changeSupport; } public final void addChangeListener(ChangeListener cl) { addChangeListener(cl, ChangeType.UNKNOWN); } public final void addChangeListener(ChangeListener cl, ChangeType ct) { ChangeSupport cs = getChangeSupport(ct); cs.addChangeListener(cl, ct); } public final void removeChangeListener(ChangeListener cl) { removeChangeListener(cl, ChangeType.UNKNOWN); } public final void removeChangeListener(ChangeListener cl, ChangeType ct) { if(hasListeners()) { ChangeSupport cs = getChangeSupport(ct); cs.removeChangeListener(cl, ct); } } public final boolean isUnchanging(ChangeType ct) { ChangeSupport cs = getChangeSupport(ct); return cs.isUnchanging(ct); } { annotators = new HashSet(); publicAnnotators = Collections.unmodifiableSet(annotators); } ReferenceServer(URL dasURL, String name, String description) { super(dasURL, dasURL, name, description); } void addAnnotator(DataSource ann) throws ChangeVetoException { if(hasListeners()) { ChangeSupport cs = getChangeSupport(ANNOTATOR); synchronized(cs) { ChangeEvent ce = new ChangeEvent(this, ANNOTATOR); cs.firePreChangeEvent(ce); annotators.add(ann); cs.firePostChangeEvent(ce); } } else { annotators.add(ann); } } public Set getAnnotaters() { return publicAnnotators; } public SequenceDB getDB() throws BioException { return new DASSequenceDB(getURL()); } public DistDataSource getDistDataSource() throws BioException { return new DASDistDataSource(getURL()); } }