/* * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should * be distributed with the code. If you do not have a copy, * see: * * http://www.gnu.org/copyleft/lesser.html * * Copyright for this code is held jointly by the individual * authors. These should be listed in @author doc comments. * * For more information on the BioJava project and its aims, * or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * */ package org.biojava.bio.seq; /** * Process strings and return strand objects. * * @author Matthew Pocock */ public final class StrandParser { public static final StrandedFeature.Strand parseStrand(String strand) { if( "+".equals(strand) || "1".equals(strand) || "plus".equals(strand) || "POSITIVE".equals(strand) ) { return StrandedFeature.POSITIVE; } else if( "-".equals(strand) || "-1".equals(strand) || "minus".equals(strand) || "NEGATIVE".equals(strand) ) { return StrandedFeature.NEGATIVE; } else if( ".".equals(strand) || "0".equals(strand) || "none".equals(strand) || "UNKNOWN".equals(strand) ) { return StrandedFeature.UNKNOWN; } throw new IllegalArgumentException("Not a legal strand: " + strand); } }