/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
*/
package org.biojava.bio.seq.io.agave;
/**
* match_region
*
* @author Hanning Ni Doubletwist Inc
* @author Greg Cox
*/
public class AGAVEMatchRegion
{
private int start ;
private int end ;
private String element_id ;
private AGAVEDbId db_id ;
//ignore bio_sequence
public void setStart(int start)
{
this.start = start ;
}
public void setEnd(int end)
{
this.end = end ;
}
public void setElementId(String id)
{
this.element_id = id ;
}
public void setDbId(AGAVEDbId id)
{
this.db_id = id ;
}
public int getStart()
{
return start ;
}
public int getEnd()
{
return end ;
}
public String getElementId()
{
return element_id ;
}
public AGAVEDbId getDbId()
{
return db_id ;
}
public String toString(String indent, String indent_unit)
{
StringBuffer sb = new StringBuffer();
sb.append(indent + "" + "\n" ) ;
sb.append( indent + indent_unit + "" + "\n" );
if( db_id != null )
sb.append( db_id.toString( indent + indent_unit, indent_unit)) ;
sb.append( indent + "" + "\n" ) ;
return sb.substring(0) ;
}
public String toString()
{
return "" + "\n"
+ "" + "\n"
+ db_id + "\n"
+ "" + "\n" ;
}
}