/* * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should * be distributed with the code. If you do not have a copy, * see: * * http://www.gnu.org/copyleft/lesser.html * * Copyright for this code is held jointly by the individual * authors. These should be listed in @author doc comments. * * For more information on the BioJava project and its aims, * or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * */ /** * @author Primary author unknown * @author Greg Cox */ package org.biojava.bio.seq.io.agave; public class AGAVEProperty { public static final String SCI_PROPERTY = "sci_property" ; public static final String RESULT_PROPERTY = "result_property" ; public static final String XREF_PROPERTY = "xref_property" ; public static final String QUALIFIER = "qualifier" ; private String prop ; private String data_type = "varchar"; private String value ; private String property_class = "result_property" ; public AGAVEProperty(String property_class, String prop, String data_type, String value) { if( property_class != null && !( property_class.equals( SCI_PROPERTY) || property_class.equals( RESULT_PROPERTY) || property_class.equals( XREF_PROPERTY) || property_class.equals( QUALIFIER)) ) throw new RuntimeException("unkownn parameter for AGAVEProperty constructor :" + property_class) ; if( property_class != null ) this.property_class = property_class ; this.prop = prop ; if( data_type != null ) this.data_type = data_type ; this.value = value ; } public String getPropClass() { return property_class ; } public String getPropType() { return prop ; } public String getDataType() { return data_type; } public String getValue() { return value ; } public String toString(String indent, String indent_unit) { StringBuffer sb = new StringBuffer() ; sb.append(indent + "<" + property_class ) ; if( property_class.equals(QUALIFIER)) { sb.append( " qualifier_type=\"" ) ; } else { sb.append( " prop_type=\"" ) ; // Fixed. Must be a bug, since it was giving duplicated attributes THOMASD } sb.append(prop); sb.append("\" data_type=\"" + data_type + "\">" + value + "" + "\n" ) ; return sb.substring(0); } public String toString() { StringBuffer sb = new StringBuffer() ; sb.append("<" + property_class ) ; if( property_class.equals(QUALIFIER)) { sb.append( " qualifier_type=\"" ) ; } else { sb.append( " prop_type=\"" ) ; // Fixed. Must be a bug, since it was giving duplicated attributes THOMASD } sb.append(prop); sb.append("\" data_type=\"" + data_type + "\">" + value + "" + "\n" ) ; return sb.substring(0); } }