/* * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should * be distributed with the code. If you do not have a copy, * see: * * http://www.gnu.org/copyleft/lesser.html * * Copyright for this code is held jointly by the individual * authors. These should be listed in @author doc comments. * * For more information on the BioJava project and its aims, * or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * */ package org.biojava.bio.seq.io.agave; import java.util.ListIterator; import org.xml.sax.Attributes; import org.xml.sax.SAXException; /** * xref_property * * @author Hanning Ni Doubletwist Inc */ public class AGAVEXrefPropPropHandler extends StAXPropertyHandler{ public static final StAXHandlerFactory AGAVE_XREF_PROP_PROP_HANDLER_FACTORY = new StAXHandlerFactory() { public StAXContentHandler getHandler(StAXFeatureHandler staxenv) { return new AGAVEXrefPropPropHandler(staxenv); } }; private String prop_type; private String data_type ; private String value ; AGAVEXrefPropPropHandler(StAXFeatureHandler staxenv) { // execute superclass method to setup environment super(staxenv); setHandlerCharacteristics("xref_property", true); } public void startElementHandler( String nsURI, String localName, String qName, Attributes attrs) throws SAXException { prop_type = attrs.getValue( "prop_type" ) ; data_type = attrs.getValue( "data_type" ) ; } public void characters(char[] ch, int start, int length) throws SAXException { value = new String(ch) ; } public void endElementHandler( String nsURI, String localName, String qName, StAXContentHandler handler) throws SAXException { int currLevel = staxenv.getLevel(); if (currLevel >=1) { ListIterator li = staxenv.getHandlerStackIterator(currLevel); while( li.hasPrevious() ) { Object ob = li.previous() ; if( ob instanceof AGAVEDbIdPropCallbackItf ) { ( (AGAVEDbIdPropCallbackItf) ob ).addProperty( new AGAVEProperty(AGAVEProperty.XREF_PROPERTY, prop_type, data_type, value)) ; return ; } } } } }