/** * BioJava development code This code may be freely distributed and modified * under the terms of the GNU Lesser General Public Licence. This should be * distributed with the code. If you do not have a copy, see: * http://www.gnu.org/copyleft/lesser.html Copyright for this code is held * jointly by the individual authors. These should be listed in * *@author doc comments. For more information on the BioJava project and its * aims, or to join the biojava-l mailing list, visit the home page at: * http://www.biojava.org/ */ package org.biojava.bio.seq.io.game12; import org.biojava.bio.seq.io.ParseException; import org.biojava.bio.seq.io.game.ElementRecognizer; import org.biojava.utils.stax.StAXContentHandler; import org.biojava.utils.stax.StringElementHandlerBase; import org.xml.sax.SAXException; /** * Handles the GAME <dbxref> element * * @author David Huen * @since 1.2 */ public class GAMEPropertyHandler extends StAXFeatureHandler { // is a container for external database references. // it is possible that non-unique occur. // temporary cache String propertyType = null; String propertyValue = null; // set up factory method /** * Description of the Field */ public final static StAXHandlerFactory GAME_PROPERTY_HANDLER_FACTORY = new StAXHandlerFactory() { public StAXContentHandler getHandler(StAXFeatureHandler staxenv) { return new GAMEPropertyHandler(staxenv); } }; /** * Constructor for the GAMEDbxrefHandler object * *@param staxenv Description of the Parameter *@param parentID Description of the Parameter */ GAMEPropertyHandler(StAXFeatureHandler staxenv) { // setup environment super(staxenv); // setup handlers // super.addHandler(new ElementRecognizer.ByLocalName("type"), new StAXHandlerFactory() { public StAXContentHandler getHandler(StAXFeatureHandler staxenv) { return new TypeHandler(); } } ); // super.addHandler(new ElementRecognizer.ByLocalName("value"), new StAXHandlerFactory() { public StAXContentHandler getHandler(StAXFeatureHandler staxenv) { return new ValueHandler(); } } ); } /** * retrieves the <type> field. */ private class TypeHandler extends StringElementHandlerBase { protected void setStringValue(String s) { propertyType = s.trim(); } } /** * retrieves the <value> field. */ private class ValueHandler extends StringElementHandlerBase { protected void setStringValue(String s) { propertyValue = s.trim(); } } public void endElementHandler( String nsURI, String localName, String qName, StAXContentHandler contentHandler) throws SAXException { // validate before going further if ((propertyType == null) || (propertyValue == null)) { return; } // set up field try { listener.addFeatureProperty(propertyType, propertyValue); } catch (ParseException pe) { pe.printStackTrace(); throw new SAXException("unexpected exception while adding as a feature property."); } } }